Glyma09g38750 - SoyBase

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Report for Sequence Feature Glyma09g38750

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44040295
stop:	44043686
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79790	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr1:30016987-30018186 REVERSE LENGTH=245	SoyBase	E_val: 5.00E-103	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3085	KOG	Predicted hydrolase (HAD superfamily)	JGI		ISS
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI		ISS
PTHR12725:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_B6TLB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ hydrolase n=1 Tax=Zea mays RepID=B6TLB5_MAIZE	SoyBase	E_val: 1.00E-97	ISS
UniRef100_I1L6C3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6C3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38750

Paralog	Evidence	Comments
Glyma18g47580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g252100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g38750

Limit To All Plant Sequences

>Glyma09g38750.2   sequence type=transcript   gene model=Glyma09g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAAAACCAGAGGGAATATTGAAGAGAGAACAAAGGAAGTGAAAGCAACATGATGCAATGAGTTACAGTGAGATACGAAAATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTGTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACCTTCGCTTTCACATTCAATCACTAGCATGGCATTGACCAACAACAACAACACCAACACCAACGAAAGGAAGCTTCCGATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCATTCTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTTTGAAGGAACTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTAATTGACGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTGGAAGGCCTAAAATCTTGCATGAGAAGTGGATATTCGTACATAGAAGGCAGCGAACAGTTGCTTCTTTCCTTAAAGCAAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTATCGTGGACATTTTGTTCGTGGGCATTTGGAAAGAGGAAGCCTGATACTGAATTCTATAAGGAAGTCGTAAGGCATCTTAAAGTTGACCCAACAAATTGTATTTTCGTAGATGACAGGTTCCTTCTCTCTTTATACACTAGATCATTTATCAGAATGAAACCACAGTATCATATCATTTATCTGTTCCACATTCATATATAGGTCTATATGCATGTATGTGTGTTTTATGTTCTAGCATCTTGGCATCCAATATCAATTTCTCTCTCAAGAAGCAGACATTTGTGATCCAGCAGATTATTTCTTTTTCCTCCCTGTCACAATCTTTTTTTTAATCTTTTGTGAAAATGATTTCTTGGGCCACAAAATATGTTTTTAATGTGATTCTCTGTGGTTTTAGTCCTCTAATTTTTTTCCTTGATTTTGCTCC

Coding sequences of Glyma09g38750

Limit To All Plant Sequences

>Glyma09g38750.1   sequence type=CDS   gene model=Glyma09g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTGTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACCTTCGCTTTCACATTCAATCACTAGCATGGCATTGACCAACAACAACAACACCAACACCAACGAAAGGAAGCTTCCGATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCATTCTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTTTGAAGGAACTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTAATTGACGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTGGAAGGCCTAAAATCTTGCATGAGAAGTGGATATTCGTACATAGAAGGCAGCGAACAGTTGCTTCTTTCCTTAAAGCAAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTATCGTGGACATTTTGTTCGTGGGCATTTGGAAAGAGGAAGCCTGATACTGAATTCTATAAGGAAGTCGTAAGGCATCTTAAAGTTGACCCAACAAATTGTATTTTCGTAGATGACAGGCAAAAAAATGTGGAGGCAGCAATTGAAGTTGGCATCAGAGGGGTACATTTCCAGAATGTCAATTCACTGTGTGAAAAACTGTCACTGATGGGGATTGACATCTCAACAGATGAAGATATATAG

>Glyma09g38750.2   sequence type=CDS   gene model=Glyma09g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTAATGGGAGGAGTTGGAGTACCCTCAATCTCAATCTGTTGTTTGTTCCAAACAAGACCCACCAGACATTTGTGTCTCAAATTCAGATTGAAACCTTCGCTTTCACATTCAATCACTAGCATGGCATTGACCAACAACAACAACACCAACACCAACGAAAGGAAGCTTCCGATTCTGCTGTTTGATATCATGGACACCCTTGTTCGTGACCCATTCTACCAAGATGTCCCTGCCTTCTTCGGAATGTCTTTGAAGGAACTCATAGATTGCAAGCACCCCACTGCTTGGATTGAGTTTGAAAAGGGTCTAATTGACGAGATGGAGCTAGCAAGAAAATTTTTTAAGGATGGAAGGGATTTTGATTTGGAAGGCCTAAAATCTTGCATGAGAAGTGGATATTCGTACATAGAAGGCAGCGAACAGTTGCTTCTTTCCTTAAAGCAAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGTACCAGTTGATTGAAGACAAGTTAAAACTATCAAAATATTTATCGTGGACATTTTGTTCGTGGGCATTTGGAAAGAGGAAGCCTGATACTGAATTCTATAAGGAAGTCGTAAGGCATCTTAAAGTTGACCCAACAAATTGTATTTTCGTAGATGACAGGTTCCTTCTCTCTTTATACACTAGATCATTTATCAGAATGAAACCACAGTATCATATCATTTATCTGTTCCACATTCATATATAG

Predicted protein sequences of Glyma09g38750

Limit To All Plant Sequences

>Glyma09g38750.1   sequence type=predicted peptide   gene model=Glyma09g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLMGGVGVPSISICCLFQTRPTRHLCLKFRLKPSLSHSITSMALTNNNNTNTNERKLPILLFDIMDTLVRDPFYQDVPAFFGMSLKELIDCKHPTAWIEFEKGLIDEMELARKFFKDGRDFDLEGLKSCMRSGYSYIEGSEQLLLSLKQNNYEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSWAFGKRKPDTEFYKEVVRHLKVDPTNCIFVDDRQKNVEAAIEVGIRGVHFQNVNSLCEKLSLMGIDISTDEDI*

>Glyma09g38750.2   sequence type=predicted peptide   gene model=Glyma09g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLMGGVGVPSISICCLFQTRPTRHLCLKFRLKPSLSHSITSMALTNNNNTNTNERKLPILLFDIMDTLVRDPFYQDVPAFFGMSLKELIDCKHPTAWIEFEKGLIDEMELARKFFKDGRDFDLEGLKSCMRSGYSYIEGSEQLLLSLKQNNYEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSWAFGKRKPDTEFYKEVVRHLKVDPTNCIFVDDRFLLSLYTRSFIRMKPQYHIIYLFHIHI*

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