Glyma09g38740 - SoyBase

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Report for Sequence Feature Glyma09g38740

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44028187
stop:	44037968
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40730	AT	Annotation by Michelle Graham. TAIR10: Protein kinase family protein with ARM repeat domain \| chr2:16990083-16996072 REVERSE LENGTH=798	SoyBase	E_val: 0	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0006409	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA export from nucleus	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0000049	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA binding	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1243	KOG	Protein kinase	JGI		ISS
PTHR12984	Panther	SCY1-RELATED S/T PROTEIN KINASE-LIKE	JGI		ISS
PTHR12984:SF3	Panther	PACE-1-RELATED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_F4II29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SCY1-like protein n=1 Tax=Arabidopsis thaliana RepID=F4II29_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI00023388F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023388F6 related cluster n=1 Tax=unknown RepID=UPI00023388F6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38740

Paralog	Evidence	Comments
Glyma18g47590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g252000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38740

Limit To All Plant Sequences

>Glyma09g38740.1   sequence type=CDS   gene model=Glyma09g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAATTCCTGAAAGAGGTCGTTGGCGGATCTGGCACCGGCGTCAAGGATCTCCCTTACACCATCGCCGAACCTTACCCTTCCGCTTGGGGCTCTTGGACTCATTCTCGCGGCACCTCCAAGGATGACGGTTCTCCCGTCTCGGTGTTCTCACTCTCTGGCTCCAATGCTCAGGACGGTCACTTAGCTGCCGCGCGCAACGGCGTCAAGCGTCTCCGAACTGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAGACTTACGATGCGGGTTCTCCTAAGGTCACGATATATATTGTGACCGAGCCTGTGATGCCGCTATCTGAGAAGATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTTCATGGCAACATTTGCATGGCTAGTACTGTTGTCACACCAACTTTGGACTGGAAGCTTCATGCTTTGGATGTTCTATCGGAGTTTGATGGGAGCAGTGAAGCGTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGCCTAATCTATGAGGTATTCTCTGGACTGAGGTTGGGCAAAACAGAGGAGTTACGCAACATTGGTTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAATATTTTCAAAATAAGTTGGTAGACACGATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTGGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCTCAGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTACTTCCAACAATTGTAAAACTCTTTGCCTCCAATGATCGAGCTATACGAGTTGCCCTTCTTCAACATATTGATCAATATGGAGAGTCGTTATCAGCGCAAGCTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGGACAATGTCAGGGTCATTATTGAAGTATCTGTCAAAGTTGCAGGTTGATGAAGAGCCAGCAATTAGAACAAATACTACCATATTATTAGGCAATATTGGAAGTTACTTAAATGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGAACTAAGGCATTTCAAGCTGTTGATCAATTTTTGCAGATAGCAAAGCAACATTATGAAAAGACAAATGCAGCAGATACCAGTTGTGGTGTGGGAAGCTCATCTGTTCCAGGAAATGCTAGTTTGCTTGGGTGGGCTATGAGCTCTTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCAAGTTCGACTGCAATCACTTCGACGTCTTCTAATGGCACTGCAGGTATAGAGACACCATCAACAGCAGCAGCCCATGTAAGCTCTACTGCAGATTTGGCTGAACACCCTGTCCCTACATCTCCTACATCAACAGATGGCTGGGGGGAACTTGAGAATGGAATTGATGAGGAGCATGGAAGTGACAGGGATGGGTGGGATGATCTGGAACCGCTTGAGGAGACAAAGCCAGCTCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCTGTTTCTCAACCTATTTCACATACAAAGCAAGCCTCAAATTTGCTATCCAAAAGTACACCAAAATTGAACAAGGATGAGGATGATGATTTGTGGGGATCTATAGCAGCTCCTGCGCCAAAAACTGCAAGACCTTTAAATTTGAAATCAGCTCAAACTGATGATGATGATCCTTGGGCGGCCATTGCTGCTCCAGCACCCACGATCAAGGCCAAACCCTTATCGGCTGGGAGAGGTAGGGGAGCCAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAAACCGGACATCATCAGGCATGTAA

Predicted protein sequences of Glyma09g38740

Limit To All Plant Sequences

>Glyma09g38740.1   sequence type=predicted peptide   gene model=Glyma09g38740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKFLKEVVGGSGTGVKDLPYTIAEPYPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYALGLHQIAKAVSFLNNDCKLVHGNICMASTVVTPTLDWKLHALDVLSEFDGSSEASSGQMLQYAWLVGSQYKPMELAKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNIGSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAASALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVALLQHIDQYGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQHYEKTNAADTSCGVGSSSVPGNASLLGWAMSSLTLKGKPSDHAPVASASSTAITSTSSNGTAGIETPSTAAAHVSSTADLAEHPVPTSPTSTDGWGELENGIDEEHGSDRDGWDDLEPLEETKPAPALANIQAAQRRPVSQPISHTKQASNLLSKSTPKLNKDEDDDLWGSIAAPAPKTARPLNLKSAQTDDDDPWAAIAAPAPTIKAKPLSAGRGRGAKPAAPKLGAQRINRTSSGM*

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