Glyma09g38730 - SoyBase

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Report for Sequence Feature Glyma09g38730

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44019511
stop:	44024569
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65410	AT	Annotation by Michelle Graham. TAIR10: non-intrinsic ABC protein 11 \| chr1:24295362-24297332 FORWARD LENGTH=345	SoyBase	E_val: 2.00E-179	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR24220	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24220:SF52	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
UniRef100_G7KQL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter n=1 Tax=Medicago truncatula RepID=G7KQL9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023388F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023388F5 related cluster n=1 Tax=unknown RepID=UPI00023388F5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38730

Paralog	Evidence	Comments
Glyma18g47600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g251900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38730

Limit To All Plant Sequences

>Glyma09g38730.1   sequence type=CDS   gene model=Glyma09g38730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCCTTTCCACCACCCCTTTTCTCCCCTTCACTGCAAAAAACGCTTCTACTAGATTCCCACCTCCCAATTCATTCTCCCGCAACAAGCAACGTAGTAACAGGGATCACAGGAAGGTTGTCTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCGCCATTAATTTCAATGGTTCGTCCAAATCAGAACAACTGAGCACGGCGTGGGATCATGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTGTATAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATTAGACATGGTGAAGCTGTTGGAATAATTGGTCCTTCTGGGACCGGCAAATCTACAGTTTTGAAGATTATTGCTGGACTTCTTGCTCCGGACAAAGGAGAAGTATATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGTGATGATGACATATCTGGTCTTCGGATTGGATTGGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGACCAGATATCAGAGCTTGTCACGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAGGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACCACAGAGGAATCAAAAGAGCCAGAGGTGCTCTTGTATGACGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAAGATCTGATTCGCTCTGTGCACATAAAAGGACGAGATGCACGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAAGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAGATATTAG

Predicted protein sequences of Glyma09g38730

Limit To All Plant Sequences

>Glyma09g38730.1   sequence type=predicted peptide   gene model=Glyma09g38730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLSTTPFLPFTAKNASTRFPPPNSFSRNKQRSNRDHRKVVCACIAPPQNFKSQDSSAINFNGSSKSEQLSTAWDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISELVTETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTEESKEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIRY*

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