Glyma09g38720 - SoyBase

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Report for Sequence Feature Glyma09g38720

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44015907
stop:	44019422
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65380	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr1:24286943-24289105 FORWARD LENGTH=720	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anatomical structure morphogenesis	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0040008	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of growth	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0033612	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor serine/threonine kinase binding	SoyBase	N/A	ISS
KOG0472	KOG	Leucine-rich repeat protein	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_F7J695	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein n=1 Tax=Lotus japonicus RepID=F7J695_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1L6C0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6C0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38720

Paralog	Evidence	Comments
Glyma18g47610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g251800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38720

Limit To All Plant Sequences

>Glyma09g38720.2   sequence type=CDS   gene model=Glyma09g38720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGGGACACACCACACCCCTCACACTCCTCTGTATGATTCTTCTTTTTGCAACCCCTTCTCTCTCAATTGATGTTCACCCACAAGACAGAATCTCACTCTCACTGTTCAGGTCATCTCTGCCAAACCCCAACCAGAGTTTGCCCAGCTGGGTAGGCTCCAACTGCACTTCATGGAGTGGAATCACCTGCGACAGCAGAACTGGGAGAGTGCTTTCCATCAACCTAACTAGCATGAACCTTTCAGGCAAAATCCACCCCAGTTTGTGCCACCTTTCATACCTCAACAAGTTGGGGTTGTCACACAACAACTTCACAGCCCCACTTCCTGAGTGTTTTGGAAACTTGCTTAACCTAAGAGCCATTGATCTCAGCCACAACAGGTTTCATGGTGGAATACCAGACTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTCAGTGGGAACCCTGGTTTGGGGGGTCCACTTCCTGCTTGGATTGGTAACTTCTCTGCAAATCTGGAAAAGTTACATCTTGGTTTCTGTTCATTCAGTGGTGGCATACCTGAGAGCTTGCTTTACATGAAGTCCCTCAAGTATTTGGACCTTGAGAACAATCTCTTGTTTGGTAATTTGGTTGATTTTCAACAGCCTTTGGTTTTGCTCAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTGCAGCTTCAGTTCAGTCTCTAACTGTGTTGAATTTGTCCAACAATTCTATTGCGGGGGGATTGCCTGCTTGTATTGCTTCTTTTCAAGCTTTGACTCATTTGAACCTTTCAGGGAACCATTTGAAGTATAGAATATATCCTAGGCTTGTGTTCTCAGAGAAACTTCTTGTTTTGGACTTGAGTAATAATGCTTTATCTGGTCCTATTCCCAGTAAAATTGCTGAGACTACTGACAAACTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAGTTCTCTGGTGAAATACCTGTGAAAATTACTGAGTTGAAAAGCTTGCAGGCCTTGTTTCTCTCTCACAATCTTCTCTCAGGAGAAATTCCTGCTAGAATTGGAAATTTGACTTATCTGCAGGTCATTGATCTCTCACACAACTCTTTGTCTGGAACCATTCCATTCAGTATTGTTGGGTGCTTTCAGCTGTATGCTCTGATACTTAACAACAACAATCTTTCTGGTGTAATTCAACCGGAGTTTGATGCGTTGGATATCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGGCTATCCCACTCACTTTGGCTGGATGCAAATCTTTGGAGATTGTAGACTTTAGTTCCAATGAGCTTTCTGGATCGTTGAATGATGCAATAACCAAATGGACAAACCTCAGGAATGTCACTGTTAAAGAGCCATTGGTTGCAGCAAGAAAGGTTCAACTCAGAGTTTCGGCGGTTGTTTCTGATAGCAATCAACTCAGTTTCACTTATGATCTTTCCTCAATGGTTGGAATTGATCTATCCAGCAACTCGCTTCATGGGGAAATTCCAAGGGGCTTATTTGGTCTATCTGGCCTAGAATATCTGAATTTGTCATGCAACTTTCTTTACGGACAGCTTCCGGGGTTGCAGAAAATGCAGAGTTTGAAAGCCTTGGATTTGTCACATAATTCCTTGTCAGGACATATCCCAGGAAACATCTCTATCCTTCAAGATCTGTCTATTTTGAATCTTTCCTACAACTGCTTTTCTGGATGTGTTCCCCAGAAGCAAGGGTATGGGAGATTTCCTGGTGCATTTGCTGGAAATCCAGATCTGTGCATGGAATCTTCCAGTGGATTATGTGATGATGGAAGGACTCAATCTGCGCAAGGAAGTACTTTTAGGGAAGATAGGATGGATGACCCAATTTCTGTGGGGATTTTCTTTATCAGTGCATTTGTTAGTTTTGATTTTGGTGTTGTGGTTCTCTTCTGTTCCGCACGGGCAAGAAATTACATTCTCCAAACAAAAGTTTGA

Predicted protein sequences of Glyma09g38720

Limit To All Plant Sequences

>Glyma09g38720.2   sequence type=predicted peptide   gene model=Glyma09g38720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMGHTTPLTLLCMILLFATPSLSIDVHPQDRISLSLFRSSLPNPNQSLPSWVGSNCTSWSGITCDSRTGRVLSINLTSMNLSGKIHPSLCHLSYLNKLGLSHNNFTAPLPECFGNLLNLRAIDLSHNRFHGGIPDSFMRLRHLTELVFSGNPGLGGPLPAWIGNFSANLEKLHLGFCSFSGGIPESLLYMKSLKYLDLENNLLFGNLVDFQQPLVLLNLASNQFAGTLPCFAASVQSLTVLNLSNNSIAGGLPACIASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNALSGPIPSKIAETTDKLGLVLLDLSHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDILRILDISNNRFSGAIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWTNLRNVTVKEPLVAARKVQLRVSAVVSDSNQLSFTYDLSSMVGIDLSSNSLHGEIPRGLFGLSGLEYLNLSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISILQDLSILNLSYNCFSGCVPQKQGYGRFPGAFAGNPDLCMESSSGLCDDGRTQSAQGSTFREDRMDDPISVGIFFISAFVSFDFGVVVLFCSARARNYILQTKV*

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