Glyma09g38710 - SoyBase

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Report for Sequence Feature Glyma09g38710

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44011811
stop:	44015622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65320	AT	Annotation by Michelle Graham. TAIR10: Cystathionine beta-synthase (CBS) family protein \| chr1:24260168-24262644 REVERSE LENGTH=425	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1764	KOG	5'-AMP-activated protein kinase, gamma subunit	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
UniRef100_I1L6B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6B9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GZA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CBS domain-containing protein CBSX6 n=1 Tax=Arabidopsis thaliana RepID=CBSX6_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38710

Paralog	Evidence	Comments
Glyma18g47620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g251700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38710

Limit To All Plant Sequences

>Glyma09g38710.1   sequence type=CDS   gene model=Glyma09g38710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGGTGTTCGTGTACCACGTGGTGGGCGATCTGACGGTGGGGAAGCCAGAGCTGGCGGAGTTTCACGAGAGTGAGACGGTGGAGTCTGCGATTAGGGCGATTGGGGAGTGCCATGAGGGGACCATACCCATTTGGAAGAAGAGATCTCAATTGGGGATTGAGAACAGTGACATGAGACAGCAGAGGTTTGTTGGTATTCTTAGTTCCTTTGACATAGTTGCGTTTTTGGCTAAGAGTCAGTGTTTGGAGGATCAGGACAAGGCCCTCAAGACTCCTGTTTCCGAGGTTGTTGTTCATAACAATTCCCTGCTCAGGGTTGTTGACCCTGCAACAAGGTTGATAGATGCGCTGGACATGATGAAACAAGGTGTGAAGCGTCTGCTTGTTCCAAAGAGCGTAGCATGGAAGGGCATGAGCAAGCGATTCTCAGTTATCTACTATGGCAAGTGGCTCAAGAATAGTGAATCTCCTGGCAACAGCAGCAACAATCTACCACTTAACATGAATCGGAGCCCCTCAACTTCCATCACTCCTATCCGTGATAGGTACTGTTGTCTCTCTAGGGAAGATGTGCTCCGTTTCATCATTGGTTGTCTTGGCGCTTTGGCTCCCCTTCCTCTCACTTCCATTGCTTCTCTTGGAGCAATTAATTCAAACTACAACTATATTGAATCTTCTACTCCAGCCATTGAAGCCACTCAAAAGCTTCCTCAAGATCCAAGTGCAGTTGCTGTAATAGAAAGCACGTCAGATGGTCAGTGCAAGATCATTGGAGAAATTTCTGCATGTAAGTTATGGAAATGTGATTACTTATCCGCAGCATGGGCTTTAGCAAATCTCTCTGCCGGGCAGTTTGTTATGGGAGTTGAAGATAATGTCACCCCAAGGTCACTGCCTCAGTTCAGTTTAGATTTAGCATCTGGAGAAAATGATTTAGCTAATGGTGGGGGTTCAAGGAAACCAAGGAAGTTTAGTAGCAGGAGTGTTGGGTTCTTCAGCAATACTGCGAGCCATAGCTTTGGTTCTAGGAGCATGTATAGGGGTAGGAGTGCACCTCTGACATGTAAAATTACTAGTTCATTGGCTGCAGTCTTGGCTCAGATGCTATCCCACAGGGCAACTCATGTCTGGGTGACCGAGGACGAGAATGACGAAGTTTTGGTCGGTGTTGTCGGATATGCTGATATTTTAGCTGCTGTAACCAAACCACCTACAGCCTTCATTCCTGCTAATAGATCTACAGAGGGGTTTGGAAACGAAATTCAGTGTTGA

Predicted protein sequences of Glyma09g38710

Limit To All Plant Sequences

>Glyma09g38710.1   sequence type=predicted peptide   gene model=Glyma09g38710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVFVYHVVGDLTVGKPELAEFHESETVESAIRAIGECHEGTIPIWKKRSQLGIENSDMRQQRFVGILSSFDIVAFLAKSQCLEDQDKALKTPVSEVVVHNNSLLRVVDPATRLIDALDMMKQGVKRLLVPKSVAWKGMSKRFSVIYYGKWLKNSESPGNSSNNLPLNMNRSPSTSITPIRDRYCCLSREDVLRFIIGCLGALAPLPLTSIASLGAINSNYNYIESSTPAIEATQKLPQDPSAVAVIESTSDGQCKIIGEISACKLWKCDYLSAAWALANLSAGQFVMGVEDNVTPRSLPQFSLDLASGENDLANGGGSRKPRKFSSRSVGFFSNTASHSFGSRSMYRGRSAPLTCKITSSLAAVLAQMLSHRATHVWVTEDENDEVLVGVVGYADILAAVTKPPTAFIPANRSTEGFGNEIQC*

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