Glyma09g38660 - SoyBase

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Report for Sequence Feature Glyma09g38660

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43975664
stop:	43977367
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65295	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:24251567-24252054 FORWARD LENGTH=115	SoyBase	E_val: 1.00E-41	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
UniRef100_C6SXQ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SXQ1_SOYBN	SoyBase	E_val: 4.00E-72	ISS
UniRef100_D7NXT9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich peptide n=1 Tax=Triticum aestivum RepID=D7NXT9_WHEAT	SoyBase	E_val: 9.00E-29	ISS

Expression Patterns of Glyma09g38660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38660

Paralog	Evidence	Comments
Glyma18g47650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g251300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g38660

Limit To All Plant Sequences

>Glyma09g38660.2   sequence type=transcript   gene model=Glyma09g38660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCACACAAATGGGTTGAAGAAAAGAAAGGGTGTTTACACTTTACTTGAGTGAGACTGAGAGTCTCAAGAGAGTGTGTGAGGCAAATGGGTCATTTCCAATGGTGCCCTTGGTGGAGGCTGGGAAGATGGAGATGATGATGGTGATGAATGAGAGCAGAAGGAAACTTGGAAGCTTCCAGATATGTGCCTTGTGCACCTGCTGTGGTGGAGCAAAAGGGATGTGCTTGCCCTCTCCTTGTTGCTATGCCATCAATTGCAACATTCCTCATAGACCTTTTGGCTTTTGCTCATTCACACCAAAGACCTGTAATTGCTTTGGATGCCATCTTTAGTCCCCTCCCCCTATTATAGTCTTATAATAATAATTGGAAAAAAATTGAGGGTTATCTTTAGTTAATTATGTTGCGAGTGTGAATGGGAAGTGAAGTTAAGAATATCTGTTCTTGGTTAGTTTTTTTATTACTATTAGTTATTATTATTGTTTGGGGATTGTTATTTCCTGGAATTATTTTTTGCTTTCTGCAGTGCTTACTGGGATTTGTTAGGGGTGCCTGAAGATATAGCACATTGTCTGATTTGTCAGGATAGCAATATATGATATAATTATATGTAGTACATGGGGAATCAAGAAAACGTTGTCCCTTTACGTGGAGATACTGGGGTTCATGATAATTTTTCACTTTTTTGAATGATTATAGTAATGCAAGTGCTCAGTGAGGCTGTCGTTTGGCCTGGACCATGATTCAACTTTACAACTTATTCTCATTTTGTTAAGGCGACCTGTGGTTTCCTTATTTAATTATTTCATTTGTTTATTTTAACGATAAAATGTTCTAATGCAGATTGCACTATTGAGGGATTTTTTTTATTGAATATTATAATGCTGATTTCTCGTATCTACTACTGCACCTTTCTTCATCCTGCAATTACCTTCACTACCCCCAAGCATTTGTTTTCTTTTGGAGCATAAAGTAGCTTTCATGGTATGGTATCTCTGG

Coding sequences of Glyma09g38660

Limit To All Plant Sequences

>Glyma09g38660.1   sequence type=CDS   gene model=Glyma09g38660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCCTGCTCATGGCCTCATAATCTCTCTCATTTTTGTGTCCATTTTAGCAAATGAGGCAAGCTTGGTCCATGAGGCAAATGGGTCATTTCCAATGGTGCCCTTGGTGGAGGCTGGGAAGATGGAGATGATGATGGTGATGAATGAGAGCAGAAGGAAACTTGGAAGCTTCCAGATATGTGCCTTGTGCACCTGCTGTGGTGGAGCAAAAGGGATGTGCTTGCCCTCTCCTTGTTGCTATGCCATCAATTGCAACATTCCTCATAGACCTTTTGGCTTTTGCTCATTCACACCAAAGACCTGTAATTGCTTTGGATGCCATCTTTAG

>Glyma09g38660.2   sequence type=CDS   gene model=Glyma09g38660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCCCTTGGTGGAGGCTGGGAAGATGGAGATGATGATGGTGATGAATGAGAGCAGAAGGAAACTTGGAAGCTTCCAGATATGTGCCTTGTGCACCTGCTGTGGTGGAGCAAAAGGGATGTGCTTGCCCTCTCCTTGTTGCTATGCCATCAATTGCAACATTCCTCATAGACCTTTTGGCTTTTGCTCATTCACACCAAAGACCTGTAATTGCTTTGGATGCCATCTTTAG

Predicted protein sequences of Glyma09g38660

Limit To All Plant Sequences

>Glyma09g38660.1   sequence type=predicted peptide   gene model=Glyma09g38660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMPAHGLIISLIFVSILANEASLVHEANGSFPMVPLVEAGKMEMMMVMNESRRKLGSFQICALCTCCGGAKGMCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL*

>Glyma09g38660.2   sequence type=predicted peptide   gene model=Glyma09g38660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPLVEAGKMEMMMVMNESRRKLGSFQICALCTCCGGAKGMCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL*

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