Glyma09g38640 - SoyBase

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Report for Sequence Feature Glyma09g38640

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43955759
stop:	43959448
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G36290	AT	Annotation by Michelle Graham. TAIR10: Uncharacterized protein family (UPF0016) \| chr5:14302977-14304972 FORWARD LENGTH=293	SoyBase	E_val: 1.00E-141	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2881	KOG	Predicted membrane protein	JGI		ISS
PTHR12608	Panther	TRANSMEMBRANE PROTEIN HTP-1 RELATED	JGI		ISS
PF01169	PFAM	Uncharacterized protein family UPF0016	JGI		ISS
UniRef100_A2Q167	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=A2Q167_MEDTR	SoyBase	E_val: 6.00E-153	ISS
UniRef100_I1L6B0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6B0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38640

Paralog	Evidence	Comments
Glyma18g47670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g251100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38640

Limit To All Plant Sequences

>Glyma09g38640.1   sequence type=CDS   gene model=Glyma09g38640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCGAACTTCGACAATCGAAGATTCGTTCTCGCTCTTCGCATTTTCCTTCTCCTCTCCTTATTCTTCAACCTCTCACCGACCTTCGCTCAGGATTCTCTCGTGCAGAACGCGAAGGAAGATTCCGGCGAATCTGTGGATCTCGGTCGCCGCGCCAAAATTGCATTGAATGGTATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGACTCCACCGGTCCTGGACTCTTCGACGCATTTTTCGCGAGTTTTTCGATGATCCTTGTCAGTGAGATTGGGGATGAGACGTTTATAATAGCAGCTCTCATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGCATACAAATAGTGCTGCTACAGTTCTTTATGCTTTCTTTGGGTTAAGGTTACTGTACATTGCATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAAGTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCACTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGACACACCATCTGTACCTCTCTGGCTGTAGTGGGAGGAAGCATGCTGGCATCTAAGATTTCCCAACGCTCAGTAGCCACTGTTGGTGGCTTGCTCTTCCTCGGATTTTCTGTATCTTCATATTTCTACCCGCCTCTATGA

Predicted protein sequences of Glyma09g38640

Limit To All Plant Sequences

>Glyma09g38640.1   sequence type=predicted peptide   gene model=Glyma09g38640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPNFDNRRFVLALRIFLLLSLFFNLSPTFAQDSLVQNAKEDSGESVDLGRRAKIALNGIENDSILSLGLDSTGPGLFDAFFASFSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALIIMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSSDSKSSQKKEMEEVEEKLDGGQGKTSVRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAVGATIGHTICTSLAVVGGSMLASKISQRSVATVGGLLFLGFSVSSYFYPPL*

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