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Report for Sequence Feature Glyma09g38620

Feature Type:gene_model
Chromosome:Gm09
Start:43945317
stop:43947537
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16490AT Annotation by Michelle Graham. TAIR10: ROP-interactive CRIB motif-containing protein 4 | chr5:5384468-5385205 REVERSE LENGTH=153 SoyBaseE_val: 1.00E-31ISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010215GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose microfibril organization SoyBaseN/AISS
GO:0017157GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of exocytosis SoyBaseN/AISS
GO:0030833GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of actin filament polymerization SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0051650GO-bp Annotation by Michelle Graham. GO Biological Process: establishment of vesicle localization SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016324GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR23202Panther WASP INTERACTING PROTEIN-RELATED JGI ISS
PTHR23202:SF14Panther RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEI JGI ISS
PF00786PFAM P21-Rho-binding domain JGI ISS
UniRef100_C6T067UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T067_SOYBN SoyBaseE_val: 2.00E-123ISS
UniRef100_Q2HW10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Wiscott-Aldrich syndrome, C-terminal n=1 Tax=Medicago truncatula RepID=Q2HW10_MEDTR SoyBaseE_val: 3.00E-72ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38620 not represented in the dataset

Glyma09g38620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g47700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g250900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g38620.1   sequence type=CDS   gene model=Glyma09g38620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAGAGAATGGAAAGGCTTGTCATTCTTCCTTTCTCTGCTGGTTGCATCTCTGAGGCCAGTGTTGCTGTTGGTGTTCCATATCCAAGAAGATCAAAACCAGACACCAATGCACCACCTCCTACAATAAAGAGGTCTAAAAGCGTCGAGGATTCAGAGATTTTGTCCGGAGAAAGCATGAAGAACTCGTTGAGGCTGCTAGATGTTGTTCCGAAGCCTAACCTATCCAACGGCTTCAATAGGCTGGTCAAGGGTTTCAAGAATATTTCTCAATTGTTTGTGGAAAAAGATGAGTTTGAAGAAGTGGAAATAGACATGGAAATAGGGTGCCCAACAGATGTGCAGCATGTGACACACATTGGTTGGGATGGCATTGCAACTTCTGCTGCTGACCCCATCATGAAGGGATGGGATGCTCTCATTCCTCATGAGCTCCTCTCTCTATCTTCCTCTCAATCTTTACAGCACCACCAAGACCTTCCTAATTTGGACGCAAAACATGATGATTCTCCTAATTAA

>Glyma09g38620.1   sequence type=predicted peptide   gene model=Glyma09g38620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQRMERLVILPFSAGCISEASVAVGVPYPRRSKPDTNAPPPTIKRSKSVEDSEILSGESMKNSLRLLDVVPKPNLSNGFNRLVKGFKNISQLFVEKDEFEEVEIDMEIGCPTDVQHVTHIGWDGIATSAADPIMKGWDALIPHELLSLSSSQSLQHHQDLPNLDAKHDDSPN*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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