Glyma09g38590 - SoyBase

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Report for Sequence Feature Glyma09g38590

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43925053
stop:	43926141
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02790	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type) family protein \| chr3:604926-605243 FORWARD LENGTH=105	SoyBase	E_val: 2.00E-53	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR21213	Panther	FAMILY NOT NAMED	JGI		ISS
UniRef100_B9RM85	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RM85_RICCO	SoyBase	E_val: 1.00E-56	ISS
UniRef100_I1L6A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6A5_SOYBN	SoyBase	E_val: 5.00E-69	ISS

Expression Patterns of Glyma09g38590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38590

Paralog	Evidence	Comments
Glyma18g47731	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g250600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38590

Limit To All Plant Sequences

>Glyma09g38590.1   sequence type=CDS   gene model=Glyma09g38590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGGTGGACGCGGCGACCACGAACCGCGGCGGCGGGAAGGCGGGTATGAAGGACCGAACCGGGTTGGAGAAGGGCGGGCACGCGAAATACGAGTGCCCTCACTGCAAGGTGACGGCGCCGGACGTGAAATCGATGCAGATCCACCACGACGCGCGTCACCCCAAGATCCCCTTCGAGGAGGACAAAGTTGTCAATCTTCACGCCACCACCAGCGTTCCCGAGTCCTCCAAGCCTCGCCCCGGTGTTCGCGGAAGCCTCAAGAAGTGA

Predicted protein sequences of Glyma09g38590

Limit To All Plant Sequences

>Glyma09g38590.1   sequence type=predicted peptide   gene model=Glyma09g38590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGMKDRTGLEKGGHAKYECPHCKVTAPDVKSMQIHHDARHPKIPFEEDKVVNLHATTSVPESSKPRPGVRGSLKK*

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