Glyma09g38570 - SoyBase

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Report for Sequence Feature Glyma09g38570

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43910418
stop:	43912464
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16460	AT	Annotation by Michelle Graham. TAIR10: Putative adipose-regulatory protein (Seipin) \| chr5:5377085-5378533 REVERSE LENGTH=368	SoyBase	E_val: 1.00E-105	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21212	Panther	BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG (BSCL2 PROTEIN)	JGI		ISS
PF06775	PFAM	Putative adipose-regulatory protein (Seipin)	JGI		ISS
UniRef100_G7KRI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seipin n=1 Tax=Medicago truncatula RepID=G7KRI4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L6A3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6A3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38570

Paralog	Evidence	Comments
Glyma18g47750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g250400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38570

Limit To All Plant Sequences

>Glyma09g38570.1   sequence type=CDS   gene model=Glyma09g38570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAACACAGAAAAGAAGGCTTTTTTTTGCCAACACCAGTTGCAAAACTAATATCCTTTCAAACGGATTTGATCTACAATGGCCTGGTTTCTCTCTTTTCCTCTATCCACTCTCTTTTTTCCGTGGCTACAGAGTCCTACCACCGTGCTGAGGAGACCAAAGACAGTGTTGAATCAGCAGTGCAACGTGCTCCTTCTCAAAGCACTCATGGCAGCGCACTCTTGCTGAAGAAACTGGGACTTTGCTTCCTGAGTGTTGCGTATGTGTGCATGGTTATGATTTTGGCTCTCATTCTGGCTGCTGTGGTGGGTGTTGCTTTGGTTCGGTTGTGGGTGGAGGAACCCGTGTCTGTCAAGGAAAATCTGCATTTTGATTACACTGAAGCTCACCCTACGGCTGTGTTTTTATTCAATGGAGTTAGAAGCTTTAAGGGTCACCTCAAGAAAAAGCAAATAAGTGTCCCAGTTGGCCACTCGTTTTTCGCTTCTTTGGTTCTTGTGATGCCTGAATCTGACTTTAATAGGGAGCTTGGCGTCTTTCAGTTGACTGCAGAACTCATATCTGTGAATGGAAATGTGATAGCAAAATCTAGCCAGCCATGCATGTTGCGGTTTAGAAGCTCGCCAATTCGACTAGCCCGGACCTTTATGATGGGTGTGCCTCTGGTGCTTGGAATCTCAGGGGAGACTCAGAATATTAATGTAGAAATACTGAGGCACAAAGAAGACTATAGAAGAAGCAATGCTATTAGAGTAACTCTGCATCCAAGAGCAGGAACATCTTCTCTTCCACAGCTATATGAAGCCGATATTGTGATAAAATCCCATTTGCCTTGGACCAAAGAATTGGTTCGAAATTGGAAGTGGACATTTTATGTTTGGGTGTCCTTGTATGTCTACATTGTACTACTTGTGTCTCTCCTATGTTGTTATAGGCCACTCGTCTTTCTGGTGACACCAGAGTATTTCAATGATCATAGGGTGAGTGAACTTACAAGAGAAGAACCAGGACAATTAGGAGATGAAAGTGAGGTTTCTGAGTTGTTGAGGAAATGGAGAAGAAGCAGAAGTAAGAGAAAAACCGTCCTGGCACATGGTGGTGTGCCAGAAACCATTGTTGGATCATCAGCATCCAGCATTAGCATGACTGCTAGAGAAGATGTAACCAGTGTGGTTATGGAGGATGAGGTTGAGGACTCTGAATCAGTGTGCATAGGTTAG

Predicted protein sequences of Glyma09g38570

Limit To All Plant Sequences

>Glyma09g38570.1   sequence type=predicted peptide   gene model=Glyma09g38570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEHRKEGFFLPTPVAKLISFQTDLIYNGLVSLFSSIHSLFSVATESYHRAEETKDSVESAVQRAPSQSTHGSALLLKKLGLCFLSVAYVCMVMILALILAAVVGVALVRLWVEEPVSVKENLHFDYTEAHPTAVFLFNGVRSFKGHLKKKQISVPVGHSFFASLVLVMPESDFNRELGVFQLTAELISVNGNVIAKSSQPCMLRFRSSPIRLARTFMMGVPLVLGISGETQNINVEILRHKEDYRRSNAIRVTLHPRAGTSSLPQLYEADIVIKSHLPWTKELVRNWKWTFYVWVSLYVYIVLLVSLLCCYRPLVFLVTPEYFNDHRVSELTREEPGQLGDESEVSELLRKWRRSRSKRKTVLAHGGVPETIVGSSASSISMTAREDVTSVVMEDEVEDSESVCIG*

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