Glyma09g38541 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g38541

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43891146
stop:	43894565
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38541

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02960	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr2:862346-863980 REVERSE LENGTH=271	SoyBase	E_val: 2.00E-18	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7L0Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase MARCH3 n=1 Tax=Medicago truncatula RepID=G7L0Z7_MEDTR	SoyBase	E_val: 9.00E-17	ISS
UniRef100_UPI000233EE12	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE12 related cluster n=1 Tax=unknown RepID=UPI000233EE12	SoyBase	E_val: 4.00E-61	ISS

Expression Patterns of Glyma09g38541

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38541 not represented in the dataset	Glyma09g38541 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38541

Paralog	Evidence	Comments
Glyma18g47775	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38541 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma09g38541

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g38541

Limit To All Plant Sequences

>Glyma09g38541.2   sequence type=transcript   gene model=Glyma09g38541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAGATAGCTAGCGGAGAAGGAGTAAAATATTTTTCAATATTGCTTCTGCCAACAAGGGAATCAAATCTGATGCCGGTTGACAACATGGGAGATAATGTTACTGTCTCGACCACTCAACACCACATTGCAATCCCCATTGAGAAATTGAATGCATCACTTGAAGCTGCAAAGGAAGAAAATTCTGTAACCGATGATGCCTATGTGGACAATGATGTCCAAAAATCTCAAGAGAAAGATGAAGAAACTGAAGAGAAGGGAGAATGTCGCTACTGTCAGGAAGAGGACTTAGTTTCTAATATGGAATCACCCTGCAATTGCAATGGTAGCGTCAAGTATGTTCACAGGAGATGCATTGATCAATGGTACAATTCCAAAGGCCGCATGATATTGTGTGAGATTTGCAGGAAGAGAGGAATGGACAATTCCTGGAACCAACACTCAAATTCGATCACCTCTGGTGCTGGCAGATCGTGCTACCAAGGGCCTCATTGA

Coding sequences of Glyma09g38541

Limit To All Plant Sequences

>Glyma09g38541.1   sequence type=CDS   gene model=Glyma09g38541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGTTGACAACATGGGAGATAATGTTACTGTCTCGACCACTCAACACCACATTGCAATCCCCATTGAGAAATTGAATGCATCACTTGAAGCTGCAAAGGAAGAAAATTCTGTAACCGATGATGCCTATGTGGACAATGATGTCCAAAAATCTCAAGAGAAAGATGAAGAAACTGAAGAGAAGGGAGAATGTCGCTACTGTCAGGAAGAGGACTTAGTTTCTAATATGGAATCACCCTGCAATTGCAATGGTAGCGTCAAGTATGTTCACAGGAGATGCATTGATCAATGGTACAATTCCAAAGGCCGCATGATATTGTGTGAGATTTGCAGGAAGAGAGGAATGGACAATTCCTGGAACCAACACTCAAATTCGATCACCTCTGGTGCTGGCAGATCGTGCTACCAAGGGCCTCATTGA

>Glyma09g38541.2   sequence type=CDS   gene model=Glyma09g38541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGTTGACAACATGGGAGATAATGTTACTGTCTCGACCACTCAACACCACATTGCAATCCCCATTGAGAAATTGAATGCATCACTTGAAGCTGCAAAGGAAGAAAATTCTGTAACCGATGATGCCTATGTGGACAATGATGTCCAAAAATCTCAAGAGAAAGATGAAGAAACTGAAGAGAAGGGAGAATGTCGCTACTGTCAGGAAGAGGACTTAGTTTCTAATATGGAATCACCCTGCAATTGCAATGGTAGCGTCAAGTATGTTCACAGGAGATGCATTGATCAATGGTACAATTCCAAAGGCCGCATGATATTGTGTGAGATTTGCAGGAAGAGAGGAATGGACAATTCCTGGAACCAACACTCAAATTCGATCACCTCTGGTGCTGGCAGATCGTGCTACCAAGGGCCTCATTGA

Predicted protein sequences of Glyma09g38541

Limit To All Plant Sequences

>Glyma09g38541.1   sequence type=predicted peptide   gene model=Glyma09g38541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVDNMGDNVTVSTTQHHIAIPIEKLNASLEAAKEENSVTDDAYVDNDVQKSQEKDEETEEKGECRYCQEEDLVSNMESPCNCNGSVKYVHRRCIDQWYNSKGRMILCEICRKRGMDNSWNQHSNSITSGAGRSCYQGPH*

>Glyma09g38541.2   sequence type=predicted peptide   gene model=Glyma09g38541   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVDNMGDNVTVSTTQHHIAIPIEKLNASLEAAKEENSVTDDAYVDNDVQKSQEKDEETEEKGECRYCQEEDLVSNMESPCNCNGSVKYVHRRCIDQWYNSKGRMILCEICRKRGMDNSWNQHSNSITSGAGRSCYQGPH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain