Glyma09g38450 - SoyBase

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Report for Sequence Feature Glyma09g38450

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43812292
stop:	43814233
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07470	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 \| chr3:2387291-2388343 REVERSE LENGTH=169	SoyBase	E_val: 1.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
PF04398	PFAM	Protein of unknown function, DUF538	JGI		ISS
UniRef100_I1L693	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L693_SOYBN	SoyBase	E_val: 9.00E-116	ISS
UniRef100_Q9SRR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F21O3.18 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SRR9_ARATH	SoyBase	E_val: 4.00E-52	ISS

Expression Patterns of Glyma09g38450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38450

Paralog	Evidence	Comments
Glyma18g47870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g249000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38450

Limit To All Plant Sequences

>Glyma09g38450.1   sequence type=CDS   gene model=Glyma09g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTAAATCTGGCGTGGTTTGGATTTTGCTGGCGTTGATCGCCGCCGCTTGGTGTCTGTTAACTCCAGCGAGGGCGAATTCGACGACAATATATGAGGAGCTCCGGGCGCAGGGTCTTCCGGTGGGGCTTCTTCCAAAGGGAATAGCGAAGTACTCGATGAACGCGACGAGCGGGGAGTTCGAGGTGTGGATGAAGGAAGCGTGCAACGCGAAGTTCGAGAACGAGGTGCACTACGACTCCAATATAAAGGGTGTTCTTGGCTACGGTCGGATCGGGGAATTATCCGGTGTGTCGGCGCAGGAGCTCTTCCTGTGGTTCCCCGTTAAGGGTATTAGGGTTGATGTTCCCACGTCGGGGCTCATTCATTTCGATGTTGGTGTTGCGGATAAGCAGTTCTCTCTTTCGCTCTTTGAAGATCCTCCTGATTGTAACCCCCAGGCCCAGGTTAATGTTGGTGGTGAAGGTGAGCAAAGGGCTGTTTGGTAG

Predicted protein sequences of Glyma09g38450

Limit To All Plant Sequences

>Glyma09g38450.1   sequence type=predicted peptide   gene model=Glyma09g38450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGKSGVVWILLALIAAAWCLLTPARANSTTIYEELRAQGLPVGLLPKGIAKYSMNATSGEFEVWMKEACNAKFENEVHYDSNIKGVLGYGRIGELSGVSAQELFLWFPVKGIRVDVPTSGLIHFDVGVADKQFSLSLFEDPPDCNPQAQVNVGGEGEQRAVW*

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