Glyma09g38420 - SoyBase

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Report for Sequence Feature Glyma09g38420

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43786908
stop:	43791705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65270	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). \| chr1:24241855-24244504 FORWARD LENGTH=292	SoyBase	E_val: 6.00E-122	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4827	KOG	Uncharacterized conserved protein	JGI		ISS
UniRef100_C6TJ15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ15_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O80798	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G65270 protein n=1 Tax=Arabidopsis thaliana RepID=O80798_ARATH	SoyBase	E_val: 3.00E-119	ISS

Expression Patterns of Glyma09g38420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38420

Paralog	Evidence	Comments
Glyma18g47920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g248700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g38420

Limit To All Plant Sequences

>Glyma09g38420.2   sequence type=transcript   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCAAACAAACCGTGTATATATATAAAGTACCGGAAAATTGGACGGAAGGGAGAGGAACTTAATGGTACCAGAGTAGAGTAGTGCGGAAGAAAAGAAAAACGAAATCCCTCGCTTTGAGAAATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTCCTGCAAAGTGGTCTTTCAAGTCACACACAGTTCTAAAGAGCAGTGAACAGGCACCGAGAGCTCCAATATTTGCTGAAGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACTGGATCTACCTGATCCCTCTTGGACTCATAGTAATGAATGCCGTCACTCAAGCTATGAATATGCCTGAGGAACAAGCTGGCGGGCAACCTGGTGCTCCAATACAGCAGCAGCCAGGATCTGCAGTACAGCGTGGACCAAGTTCTGGTGGTGTGCGTAGAAGATGATAAGTTTGCTTCCTCTACCTCGCAAGACATTATTTGAGGGCATTGGTAATCAATGTAATCTTAGGTTGACCTTTTATGTAGCATTATTTAATAATCTTAATTGCATATTAGTAGCTCTGTGCCCATATGAAAAGAGATTTTAAACCGATTTGCTTGTAAACTTTGAAACAGCGATAAGTTTTCCAGTTAGATTGACTAATGTTATATATTGAAAATTAAATTTTGACCCGAATATTTTGATTTCCTCTGATATTGCATGATGTTTCTACTATTATCAATCAATGCGAAGGACAGAGGATCCACGAATAAAAA

>Glyma09g38420.3   sequence type=transcript   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCAAACAAACCGTGTATATATATAAAGTACCGGAAAATTGGACGGAAGGGAGAGGAACTTAATGGTACCAGAGTAGAGTAGTGCGGAAGAAAAGAAAAACGAAATCCCTCGCTTTGAGAAATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTCCTGCAAAGTGGTCTTTCAAGTCACACACAGTTCTAAAGAGCAGTGAACAGGCACCGAGAGCTCCAATATTTGCTGAAGAGGCACTTGGCGGGCAGGAGGGAGATGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACGTGAGTATACAACTACATGTTTACATGCTGGCTTGATCTTTAAAGCCATAACTATACCTTTTTTCCCCCAAAACAAAATTATAAATGTATGTACTTCTAAATTAACATTTTCATCTGGAATCTTTCTCGATACCAGTGGATCTACCTGATCCCTCTTGGACTCATAGTAATGAATGCCGTCACTCAAGCTATGAATATGCCTGAGGAACAAGCTGGCGGGCAACCTGGTGCTCCAATACAGCAGCAGCCAGGATCTGCAGTACAGCGTGGACCAAGTTCTGGTGGTGTGCGTAGAAGATGATAAGTTTGCTTCCTCTACCTCGCAAGACATTATTTGAGGGCATTGGTAATCAATGTAATCTTAGGTTGACCTTTTATGTAGCATTATTTAATAATCTTAATTGCATATTAGTAGCTCTGTGCCCATATGAAAAGAGATTTTAAACCGATTTGCTTGTAAACTTTGAAACAGCGATAAGTTTTCCAGTTAGATTGACTAATGTTATATATTGAAAATTAAATTTTGACCCGAATATTTTGATTTCCTCTGATATTGCATGATGTTTCTACTATTATCAATCAATGCGAAGGACAGAGGATCCACGAATAAAAA

>Glyma09g38420.4   sequence type=transcript   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCAAACAAACCGTGTATATATATAAAGTACCGGAAAATTGGACGGAAGGGAGAGGAACTTAATGGTACCAGAGTAGAGTAGTGCGGAAGAAAAGAAAAACGAAATCCCTCGCTTTGAGAAATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTAGCTCCAATATTTGCTGAAGAGGCACTTGGCGGGCAGGAGGGAGATGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACTGGATCTACCTGATCCCTCTTGGACTCATAGTAATGAATGCCGTCACTCAAGCTATGAATATGCCTGAGGAACAAGCTGGCGGGCAACCTGGTGCTCCAATACAGCAGCAGCCAGGATCTGCAGTACAGCGTGGACCAAGTTCTGGTGGTGTGCGTAGAAGATGATAAGTTTGCTTCCTCTACCTCGCAAGACATTATTTGAGGGCATTGGTAATCAATGTAATCTTAGGTTGACCTTTTATGTAGCATTATTTAATAATCTTAATTGCATATTAGTAGCTCTGTGCCCATATGAAAAGAGATTTTAAACCGATTTGCTTGTAAACTTTGAAACAGCGATAAGTTTTCCAGTTAGATTGACTAATGTTATATATTGAAAATTAAATTTTGACCCGAATATTTTGATTTCCTCTGATATTGCATGATGTTTCTACTATTATCAATCAATGCGAAGGACAGAGGATCCACGAATAAAAA

Coding sequences of Glyma09g38420

Limit To All Plant Sequences

>Glyma09g38420.1   sequence type=CDS   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTCCTGCAAAGTGGTCTTTCAAGTCACACACAGTTCTAAAGAGCAGTGAACAGGCACCGAGAGCTCCAATATTTGCTGAAGAGGCACTTGGCGGGCAGGAGGGAGATGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACTGGATCTACCTGATCCCTCTTGGACTCATAGTAATGAATGCCGTCACTCAAGCTATGAATATGCCTGAGGAACAAGCTGGCGGGCAACCTGGTGCTCCAATACAGCAGCAGCCAGGATCTGCAGTACAGCGTGGACCAAGTTCTGGTGGTGTGCGTAGAAGATGA

>Glyma09g38420.2   sequence type=CDS   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTCCTGCAAAGTGGTCTTTCAAGTCACACACAGTTCTAAAGAGCAGTGAACAGGCACCGAGAGCTCCAATATTTGCTGAAGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACTGGATCTACCTGATCCCTCTTGGACTCATAGTAATGAATGCCGTCACTCAAGCTATGAATATGCCTGAGGAACAAGCTGGCGGGCAACCTGGTGCTCCAATACAGCAGCAGCCAGGATCTGCAGTACAGCGTGGACCAAGTTCTGGTGGTGTGCGTAGAAGATGA

>Glyma09g38420.3   sequence type=CDS   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTCCTGCAAAGTGGTCTTTCAAGTCACACACAGTTCTAAAGAGCAGTGAACAGGCACCGAGAGCTCCAATATTTGCTGAAGAGGCACTTGGCGGGCAGGAGGGAGATGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACGTGAGTATACAACTACATGTTTACATGCTGGCTTGA

>Glyma09g38420.4   sequence type=CDS   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTATTACTCTTCCGGTGGGTTCTGCCACTGACTCTGTTGCTCACTTGCGCGTTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACCAAGAGTTCGGCATCGAGGGAGGACGAGCCTCCTTCGATTCCGATTCGCACCCATCTCCCACCTCCACCTTGAGGAAGAGCTTTTCTGACTCCTCCTCCGACTCCAAGATCCACTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTTAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGCGATCCTTTGACTGACGTTGAGCAGAAGAAGTTTCAAGAGCTGTTGCAAGGAGATGATTTCTATACGATTAGATTGCCGTCCAATGTTTTGAGCCCTCCCGGCCGGGAATATATTATTTCTTCCGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACGTCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCTCGGCATCTCAAGCTTAGCTCCAATATTTGCTGA

Predicted protein sequences of Glyma09g38420

Limit To All Plant Sequences

>Glyma09g38420.1   sequence type=predicted peptide   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVLLFRWVLPLTLLLTCALGFQSDELLLDDQEFGIEGGRASFDSDSHPSPTSTLRKSFSDSSSDSKIHFPLQHAFGDSDFSDAGNFSARLKTWSHGAQTLTKLRFKRDPLTDVEQKKFQELLQGDDFYTIRLPSNVLSPPGREYIISSVKARCLPGDGLEEHFVIQMEGVNVLAVSYGAPGACPYPRHLKLPAKWSFKSHTVLKSSEQAPRAPIFAEEALGGQEGDGEAVQPIERSFWAKYWIYLIPLGLIVMNAVTQAMNMPEEQAGGQPGAPIQQQPGSAVQRGPSSGGVRRR*

>Glyma09g38420.2   sequence type=predicted peptide   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVLLFRWVLPLTLLLTCALGFQSDELLLDDQEFGIEGGRASFDSDSHPSPTSTLRKSFSDSSSDSKIHFPLQHAFGDSDFSDAGNFSARLKTWSHGAQTLTKLRFKRDPLTDVEQKKFQELLQGDDFYTIRLPSNVLSPPGREYIISSVKARCLPGDGLEEHFVIQMEGVNVLAVSYGAPGACPYPRHLKLPAKWSFKSHTVLKSSEQAPRAPIFAEEAVQPIERSFWAKYWIYLIPLGLIVMNAVTQAMNMPEEQAGGQPGAPIQQQPGSAVQRGPSSGGVRRR*

>Glyma09g38420.3   sequence type=predicted peptide   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVLLFRWVLPLTLLLTCALGFQSDELLLDDQEFGIEGGRASFDSDSHPSPTSTLRKSFSDSSSDSKIHFPLQHAFGDSDFSDAGNFSARLKTWSHGAQTLTKLRFKRDPLTDVEQKKFQELLQGDDFYTIRLPSNVLSPPGREYIISSVKARCLPGDGLEEHFVIQMEGVNVLAVSYGAPGACPYPRHLKLPAKWSFKSHTVLKSSEQAPRAPIFAEEALGGQEGDGEAVQPIERSFWAKYVSIQLHVYMLA*

>Glyma09g38420.4   sequence type=predicted peptide   gene model=Glyma09g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVLLFRWVLPLTLLLTCALGFQSDELLLDDQEFGIEGGRASFDSDSHPSPTSTLRKSFSDSSSDSKIHFPLQHAFGDSDFSDAGNFSARLKTWSHGAQTLTKLRFKRDPLTDVEQKKFQELLQGDDFYTIRLPSNVLSPPGREYIISSVKARCLPGDGLEEHFVIQMEGVNVLAVSYGAPGACPYPRHLKLSSNIC*

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