Glyma09g38340 - SoyBase

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Report for Sequence Feature Glyma09g38340

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43720823
stop:	43726668
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G36700	AT	Annotation by Michelle Graham. TAIR10: 2-phosphoglycolate phosphatase 1 \| chr5:14421929-14424430 REVERSE LENGTH=362	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0008967	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG2882	KOG	p-Nitrophenyl phosphatase	JGI		ISS
PTHR19288	Panther	4-NITROPHENYLPHOSPHATASE-RELATED	JGI		ISS
PTHR19288:SF6	Panther	4-NITROPHENYLPHOSPHATASE	JGI		ISS
UniRef100_G7KSE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycolate phosphatase n=1 Tax=Medicago truncatula RepID=G7KSE8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L677	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L677_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38340 not represented in the dataset	Glyma09g38340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38340

Paralog	Evidence	Comments
Glyma18g48010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g247900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g38340

Limit To All Plant Sequences

>Glyma09g38340.3   sequence type=transcript   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCCAAAAGTGTCCACTCAAACCTATGGCTCCTATTCAACCAAATAACCACTCCCCCCTTCGTAGTAGTGGGTGCACCCATCCACGCACCACAAAATTAATAACCCAAAAAATACAAAAACAACTTTGCAATTTCGTAGGAGATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCGTCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTTTGACGCTGCTCGGAACTCTCTATCATCACCCAACTCCGCGATCTTCAAATGGAAAAGAAAGGCCAATTATAACCGTCATAGTTCTGGAATGGGGACCTTCACCACTCGCGCGTTGGCGCAGCCGCTTCAGAACGCCGACGAACTCATCGACTCCGTCGAGACATTTATCTTCGATTGTGACGGAGTTATATGGAAAGGTGATAAATTAATAGACGGAGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTCGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATCGGAGAAGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATACCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAAATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATGTTGGAGCAGTTGTTGTTGGGTTTGATCGCTACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTCTCAGTGGATCTACTCAACGTGAGCCATTAGTTGTTGGAAAACCCTCAACGTTTATGATGGATTACTTGGCAAACAAATTTGGCATTTCGAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGATATCTTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTGCTCTCAGGGGTCACCACACTGGCCATGCTTCAGAGCCCTAACAACTCCATACAGCCAGACTTTTATACCAATAAAATTTCAGATTTTCTTTCCCTGAAAGCTGCAGCTGTATGACTATAATATTTATACATTATCCCCACACGATGGTGGGAAAAGCCATGTATTTAAGAAGTAAGTTGAATTTTATCCATTCCTTGTTTATATTTATTAATCAATATTAGTCCCTGAGAGGACTAAAAATAGGCAACAAAATGACAAATTCAATTTTTGGATAATTGAACTTCTATTTTACTTTAATAGATTTTTTGAAGAGTACAAAAGTCAAAAAGTTTAAACCTTAGGGTTTTTAAAGTTAAACAGGTTCAAAAAACAATAC

>Glyma09g38340.4   sequence type=transcript   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCCAAAAGTGTCCACTCAAACCTATGGCTCCTATTCAACCAAATAACCACTCCCCCCTTCGTAGTAGTGGGTGCACCCATCCACGCACCACAAAATTAATAACCCAAAAAATACAAAAACAACTTTGCAATTTCGTAGGAGATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCGTCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTTTGACGCTGCTCGGAACTCTCTATCATCACCCAACTCCGCGATCTTCAAATGGAAAAGAAAGGCCAATTATAACCGTCATAGTTCTGGAATGGGGACCTTCACCACTCGCGCGTTGGCGCAGCCGCTTCAGAACGCCGACGAACTCATCGACTCCGTCGAGACATTTATCTTCGATTGTGACGGAGTTATATGGAAAGGTGATAAATTAATAGACGGAGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTCGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATCGGAGAAGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATACCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAAATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATTTGTTGTTGGGTTTGATCGCTACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTCTCAGTGGATCTACTCAACGTGAGCCATTAGTTGTTGGAAAACCCTCAACGTTTATGATGGATTACTTGGCAAACAAATTTGGCATTTCGAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGATATCTTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTGCTCTCAGGGGTCACCACACTGGCCATGCTTCAGAGCCCTAACAACTCCATACAGCCAGACTTTTATACCAATAAAATTTCAGATTTTCTTTCCCTGAAAGCTGCAGCTGTATGACTATAATATTTATACATTATCCCCACACGATGGTGGGAAAAGCCATGTATTTAAGAAGTAAGTTGAATTTTATCCATTCCTTGTTTATATTTATTAATCAATATTAGTCCCTGAGAGGACTAAAAATAGGCAACAAAATGACAAATTCAATTTTTGGATAATTGAACTTCTATTTTACTTTAATAGATTTTTTGAAGAGTACAAAAGTCAAAAAGTTTAAACCTTAGGGTTTTTAAAGTTAAACAGGTTCAAAAAACAATAC

Coding sequences of Glyma09g38340

Limit To All Plant Sequences

>Glyma09g38340.2   sequence type=CDS   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCGTCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTTTGACGCTGCTCGGAACTCTCTATCATCACCCAACTCCGCGATCTTCAAATGGAAAAGAAAGGCCAATTATAACCGTCATAGTTCTGGAATGGGGACCTTCACCACTCGCGCGTTGGCGCAGCCGCTTCAGAACGCCGACGAACTCATCGACTCCGTCGAGACATTTATCTTCGATTGTGACGGAGTTATATGGAAAGGTGATAAATTAATAGACGGAGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTCGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATCGGAGAAGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATACCAGTACCTTGGTGGGCCGGTTGGAGCAGTTGTTGTTGGGTTTGATCGCTACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTCTCAGTGGATCTACTCAACGTGAGCCATTAGTTGTTGGAAAACCCTCAACGTTTATGATGGATTACTTGGCAAACAAATTTGGCATTTCGAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGATATCTTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTGCTCTCAGGGGTCACCACACTGGCCATGCTTCAGAGCCCTAACAACTCCATACAGCCAGACTTTTATACCAATAAAATTTCAGATTTTCTTTCCCTGAAAGCTGCAGCTGTATGA

>Glyma09g38340.3   sequence type=CDS   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCGTCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTTTGACGCTGCTCGGAACTCTCTATCATCACCCAACTCCGCGATCTTCAAATGGAAAAGAAAGGCCAATTATAACCGTCATAGTTCTGGAATGGGGACCTTCACCACTCGCGCGTTGGCGCAGCCGCTTCAGAACGCCGACGAACTCATCGACTCCGTCGAGACATTTATCTTCGATTGTGACGGAGTTATATGGAAAGGTGATAAATTAATAGACGGAGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTCGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATCGGAGAAGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATACCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAAATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATGTTGGAGCAGTTGTTGTTGGGTTTGATCGCTACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTCTCAGTGGATCTACTCAACGTGAGCCATTAGTTGTTGGAAAACCCTCAACGTTTATGATGGATTACTTGGCAAACAAATTTGGCATTTCGAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGATATCTTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTGCTCTCAGGGGTCACCACACTGGCCATGCTTCAGAGCCCTAACAACTCCATACAGCCAGACTTTTATACCAATAAAATTTCAGATTTTCTTTCCCTGAAAGCTGCAGCTGTATGA

>Glyma09g38340.4   sequence type=CDS   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCGTCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTTTGACGCTGCTCGGAACTCTCTATCATCACCCAACTCCGCGATCTTCAAATGGAAAAGAAAGGCCAATTATAACCGTCATAGTTCTGGAATGGGGACCTTCACCACTCGCGCGTTGGCGCAGCCGCTTCAGAACGCCGACGAACTCATCGACTCCGTCGAGACATTTATCTTCGATTGTGACGGAGTTATATGGAAAGGTGATAAATTAATAGACGGAGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTCGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATCGGAGAAGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATACCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAAATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATTTGTTGTTGGGTTTGATCGCTACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTCTCAGTGGATCTACTCAACGTGAGCCATTAG

Predicted protein sequences of Glyma09g38340

Limit To All Plant Sequences

>Glyma09g38340.2   sequence type=predicted peptide   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRSSTLTQSVTVTCVRHSHRQWFQSIPVNYRFFDAARNSLSSPNSAIFKWKRKANYNRHSSGMGTFTTRALAQPLQNADELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVSEEEIFASSFAAAAYLKSIDFPKDKKVYVIGEDGILKELELAGYQYLGGPVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGALSGSTQREPLVVGKPSTFMMDYLANKFGISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLAMLQSPNNSIQPDFYTNKISDFLSLKAAAV*

>Glyma09g38340.3   sequence type=predicted peptide   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRSSTLTQSVTVTCVRHSHRQWFQSIPVNYRFFDAARNSLSSPNSAIFKWKRKANYNRHSSGMGTFTTRALAQPLQNADELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVSEEEIFASSFAAAAYLKSIDFPKDKKVYVIGEDGILKELELAGYQYLGGPEDGGKKIELKPGFLMEHDEDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGALSGSTQREPLVVGKPSTFMMDYLANKFGISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLAMLQSPNNSIQPDFYTNKISDFLSLKAAAV*

>Glyma09g38340.4   sequence type=predicted peptide   gene model=Glyma09g38340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRSSTLTQSVTVTCVRHSHRQWFQSIPVNYRFFDAARNSLSSPNSAIFKWKRKANYNRHSSGMGTFTTRALAQPLQNADELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVSEEEIFASSFAAAAYLKSIDFPKDKKVYVIGEDGILKELELAGYQYLGGPEDGGKKIELKPGFLMEHDEDLLLGLIATSTTIKSSMGHSVYVKTLDVFSLLQTEMLLLISQMLKNGQVGAQWLALSVDLLNVSH*

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