Report for Sequence Feature Glyma09g38300
Feature Type: gene_model
Chromosome: Gm09
Start: 43689993
stop: 43697730
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g38300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G65540 AT
Annotation by Michelle Graham. TAIR10: LETM1-like protein | chr1:24362382-24366011 REVERSE LENGTH=736
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005509 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calcium ion binding
SoyBase N/A ISS
KOG1043
KOG
Ca2+-binding transmembrane protein LETM1/MRS7
JGI ISS
PTHR14009 Panther
LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
JGI ISS
PTHR14009:SF1 Panther
LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
JGI ISS
PF07766 PFAM
LETM1-like protein
JGI ISS
UniRef100_G7KSF6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LETM1 and EF-hand domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KSF6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L672 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L672_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g38300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g38300
Paralog Evidence Comments
Glyma18g48050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g38300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g247500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g38300
Coding sequences of Glyma09g38300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g38300.1 sequence type=CDS gene model=Glyma09g38300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCTCTATGTAGTCTACCTACTCGCATTATTTTTGGATTCTCCAGTGTTGGGCACGCTCAGCCATTGGAATCTAGTGAATTAGAAGGTGTGAGCCAGTTTCCCTTCTGTCCATCTGCAACTACGGAAAATGTACAGGAAAAAAAAATATTTACTGTCAACAAAGATGATCTAGCAGCTTATGCAGCTTCAAGATTTATCTCGCACAGTTCCTTTAGAGTATCAAGTTTTGGATTTATATCTGACAAGATAGAGTTAGTTTATCTTTCAAGATTGGGGTGGTTATCCAGATGTAGCCGTAATATTTCCACGGCTTCAGCTGATCAATCTGGATTGACTAGCAGTTATAAGGGAAGTGAACAATCAGCTACTATACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAACATAAAAGCAAAAGCTAAGGCTAAACAAATGCAAGAACCAAAGAAGAGTGCTGATTCTATTTTAAGGAAATTATGGACTAGGATTTTAGGAATTGGTCCAGCTTTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCATCATTGGTGGGATGAATTTAAATCTACCCTTCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATCAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTCGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTGTTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTAAAAAGAAGGCTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAATTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCCCGAGTTTCTAATGATGAAATCTTAGAATTTGCCAAATTATTTAATGATGGGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCAGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTTGGGGTGACAACTTTGCCGTCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTAATCAAGGAGGAGGAAAAGAAAGAGGAGACAGAGCAGGCCAAAATGGTAGAATCTGTTGTTGGTAGTGAAGAGAGGGCTTCAAGAACCAAACAAATACAAGGAGAGGTAAAAACAAAGACATTGAATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCAATCTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTCAAGAGTTTTTGAGGCTTGTTAGAAAGGAGATGGAGCTTTATGATAGTATGGTAGGGAAAGAAGGTACAGAAGATGAACAGGAAGCTAAGAAGGCCTATAAAGCTGCAAGGAAGGAAAGTGATGGTGCTATTGAGGTGGCAATTGGTGATAAGGTTTCTTCAGCACTTGTTGACAGGGTTGATACTATGCTCCAAACACTTGAAAAAGAAATTGATGATGTTGATGCTAAAATTGGAGACCGCTGGCGGTTGCTAGACAGGGATTATGATGGGAAAGTGACACCTGAGGAGGTTGTTTCTGCTGCTATGTATCTGAAGGACACTCTGGGCAAAGAAGGAATTCATGAGTTTATCAGCAACCTTTCCAAGGATAGTGATGGGAAAATATTGGTGGAAGACATTGCCAAATTGGGCGCCCAGAAAGAAGAAGCCGATAGAGACGAAGTGGGAAGATCATAG
Predicted protein sequences of Glyma09g38300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g38300.1 sequence type=predicted peptide gene model=Glyma09g38300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASRVILQKRRSLFFNPLCSLPTRIIFGFSSVGHAQPLESSELEGVSQFPFCPSATTENVQEKKIFTVNKDDLAAYAASRFISHSSFRVSSFGFISDKIELVYLSRLGWLSRCSRNISTASADQSGLTSSYKGSEQSATIQKKEASPEECDEAVEGLSNIKAKAKAKQMQEPKKSADSILRKLWTRILGIGPAFRTIMSMSRDDWAKKFHHWWDEFKSTLQHYWFGTKLLWADIRISSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNSQSGEMKKTAEDLDEFMNKVRTGARVSNDEILEFAKLFNDGLTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRGLLGLLSVEEMQQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTTLPSEDSVSERKRKLEYLEMQEELIKEEEKKEETEQAKMVESVVGSEERASRTKQIQGEVKTKTLNKQEHLWELSRALAILASASSVSRERQEFLRLVRKEMELYDSMVGKEGTEDEQEAKKAYKAARKESDGAIEVAIGDKVSSALVDRVDTMLQTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVVSAAMYLKDTLGKEGIHEFISNLSKDSDGKILVEDIAKLGAQKEEADRDEVGRS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
