Glyma09g38270 - SoyBase

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Report for Sequence Feature Glyma09g38270

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43663171
stop:	43665933
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G44750	AT	Annotation by Michelle Graham. TAIR10: purine permease 11 \| chr1:16893825-16895168 FORWARD LENGTH=367	SoyBase	E_val: 1.00E-160	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0015931	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity	SoyBase	N/A	ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_B9SKH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATPUP11, putative n=1 Tax=Ricinus communis RepID=B9SKH5_RICCO	SoyBase	E_val: 4.00E-177	ISS
UniRef100_C6TL30	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TL30_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38270

Paralog	Evidence	Comments
Glyma18g48100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g247200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38270

Limit To All Plant Sequences

>Glyma09g38270.1   sequence type=CDS   gene model=Glyma09g38270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGATAATGAAGAACCGATGATCGTACCTGGATCGATGTCTGAATTAGCGTTTAATAAATATAAGCGATGGCAATGGTGGTGTCTTGTGACACTCAGCATAGCCTTTCTTATAGTTGGCCAATCTGCTGCTGTTATCCTTGGAAGATTTTATTATGATCAGGGTGGAAATAGTAAATGGATGGCTACTCTAGTTCAAACTGCTGCCTTCCCGATCTTGTTCATTCCATTATTTACAATTCCTTCACCTCCAGAGGCTTCAACTTCTGCTTCACCTCCCATCAAAATTATTCTTTTGATATATTTTGGTCTTGGAGTCTTAATTGCTGCTGACAATATGATGTACTCCACTGGACTCTTATACCTCTCGGCTTCTACCTATTCGCTGATTTGTGCATCACAGTTAGCTTTTAATGCAGTTTTCTCATATTTTATCAATTCTCAAAAGTTCACTGCCTTGATTATAAACTCTACAGTGGTTCTCACTTTATCTGCTGCACTCCTTGCTGTTAACGAAGACACAGATGAACCATCTGGTTTCTCCAAGGGAAAGTACATTATTGGTTTCCTATGTACCCTTGGAGCTTCTGCAGTGTACTCTCTTTTGCTTTCCCTCATGCAGCTGACCTTTGAGAAGGTTCTGAAGAAGGAAACATTTTCTGTTGTTTTGGAAATGCAAATCTACACATCATTCGTTGCCTCTGGTGCTTCTGTCATAGGCCTATTTGCAAGTGGGGAATGGCGTACTTTGCATGGAGAAATGGAGGGTTTTCAGAAAGGATATGTTGCTTATGTTATGACTTTGGTTTGGACTTCAATAGCCTGGCAGGTATGCTCTGTTGGTGTTGTTGGCTTGATCTTCCTAGTGTCTTCTCTCTACTCCAATGTTATAAGCACAGTTTCTTTAGCCGTAACTCCTATTGCTGCTGTTATAGTTTTTCATGATAAGATGAATGGGGTGAAGATAATTTCTATGCTTTTGGCTCTATGGGGTTTTGCCTCTTATATTTATCAGAATTATCTTGATGATTCAAAGACAAGACATGCACAAGCTGCTACTAAGTCCCAAAATGATTCTTCATGTTGA

Predicted protein sequences of Glyma09g38270

Limit To All Plant Sequences

>Glyma09g38270.1   sequence type=predicted peptide   gene model=Glyma09g38270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDNEEPMIVPGSMSELAFNKYKRWQWWCLVTLSIAFLIVGQSAAVILGRFYYDQGGNSKWMATLVQTAAFPILFIPLFTIPSPPEASTSASPPIKIILLIYFGLGVLIAADNMMYSTGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDTDEPSGFSKGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLEMQIYTSFVASGASVIGLFASGEWRTLHGEMEGFQKGYVAYVMTLVWTSIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKTRHAQAATKSQNDSSC*

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