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Report for Sequence Feature Glyma09g38241

Feature Type:gene_model
Chromosome:Gm09
Start:43636949
stop:43641007
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g38241
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37850AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328 SoyBaseE_val: 1.00E-25ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR23042Panther CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS JGI ISS
PTHR23042:SF25Panther NAI1, DNA BINDING / TRANSCRIPTION FACTOR JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7IMA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH25 n=1 Tax=Medicago truncatula RepID=G7IMA7_MEDTR SoyBaseE_val: 1.00E-29ISS
UniRef100_UPI0002338761UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338761 related cluster n=1 Tax=unknown RepID=UPI0002338761 SoyBaseE_val: 2.00E-153ISS

Expression Patterns of Glyma09g38241
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38241 not represented in the dataset
Glyma09g38241 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38241
ParalogEvidenceComments
Glyma18g48143 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38241 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g246800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g38241
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g38241
>Glyma09g38241.1   sequence type=CDS   gene model=Glyma09g38241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAATAATGGAGGATTCAAGGATGGACTTGCTTTCTCAATGGGAAATGGGTGATGATGATTTCTTCAATAATCAAATCCACATGATCTCTTTCACCGAAGAAAAGTCCTCCAAAGACATGATTTTTCAACAAGAAGTTTTCTCCTCATCTTCTTCCTCTTCTTCCCTTCAAAGCAACTTGAAACCTTGCTCACCATTTCCAACGGGTGGTTACGTTTTGTCTTTTGATAAACCTGTTGTTGAACCACTTTACCCTAAAAAACATCACTCTCCTAAAAGCCTAGCACAAAGCCAATATTGTGTTGAACCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCTGAGAGAAAAAGGAGAGAGGAATTGACTAAGAGCATCGTAGCACTTTCAGCCACCATTCCTGGGTTAAAGAAGACAGACAAGGTCAATGTAGTGCGTGAAGCTGTCAGTTATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTAGAAAATCAAAAGAGAAAGGAAAGTATGAATTCAATAATACTCAACAAGCACAGGCCACTCTCCATAAATGATCAAGCCACTCATGGATTTGTGGATGTGAATGAAGAACTCCTCGAGGTGAAAGTCACTGTTTTAGACAAGGAAGTGCTCATTGGAATTTATTGTGAGAAACAGAGGCAGAGATTGCTCAAATATTGTCATTGCTTGATATCTCCATCTTTCTATCACCCATACCAGCGATCTCTCTTAGGAACTCTTGCTCATCAAATGAGCCATGATGACTTTCATTCAACACATCATCATATTCCTCCATTTCCTGTGCCAAAAAAGAGAACTTTATAA
Predicted protein sequences of Glyma09g38241
>Glyma09g38241.1   sequence type=predicted peptide   gene model=Glyma09g38241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIMEDSRMDLLSQWEMGDDDFFNNQIHMISFTEEKSSKDMIFQQEVFSSSSSSSSLQSNLKPCSPFPTGGYVLSFDKPVVEPLYPKKHHSPKSLAQSQYCVEPKAFPRTRPRVHILAERKRREELTKSIVALSATIPGLKKTDKVNVVREAVSYVKQLQERVKELENQKRKESMNSIILNKHRPLSINDQATHGFVDVNEELLEVKVTVLDKEVLIGIYCEKQRQRLLKYCHCLISPSFYHPYQRSLLGTLAHQMSHDDFHSTHHHIPPFPVPKKRTL*






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