SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48390 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19612078-19615363 FORWARD LENGTH=936 | SoyBase | E_val: 2.00E-64 | ISS |
| GO:0000712 | GO-bp | Annotation by Michelle Graham. GO Biological Process: resolution of meiotic recombination intermediates | SoyBase | N/A | ISS |
| GO:0007140 | GO-bp | Annotation by Michelle Graham. GO Biological Process: male meiosis | SoyBase | N/A | ISS |
| GO:0007143 | GO-bp | Annotation by Michelle Graham. GO Biological Process: female meiosis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF08631 | PFAM | Meiosis protein SPO22/ZIP4 like | JGI | ISS | |
| UniRef100_A2Q5X4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TPR repeat n=1 Tax=Medicago truncatula RepID=A2Q5X4_MEDTR | SoyBase | E_val: 2.00E-79 | ISS |
| UniRef100_I1L662 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L662_SOYBN | SoyBase | E_val: 3.00E-179 | ISS |
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Glyma09g38193 not represented in the dataset |
Glyma09g38193 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g38193.1 sequence type=CDS gene model=Glyma09g38193 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCCGGTCACTCCACCGAGACACGGTGGCTAACAACCGTAGCCTCTCTGAAGTTGAAGCAATCGTTAAACAGCTCGAAGCTCGCTCCGCCGACAAACCCCCGCCGGAGACTGCTGCCTCCGATCTCCGGCAGTGCTTGGCTCAGCTGAGTCAACTCGTTCCGTTTCCGAACTTGTTGAAGCTTCAGATTTGGAAGCTCAGCTACCGCCTCTGGAACGCGTGCGTCGATATCTCGAACACCACCGCCATCCGCTCCTCCTCCTCCGCAACCACCGCCGCCACCGAAAGCCAGGCCGAACTCCGGCACATCGCCGCGGACCTCCTCTCTATCGCCGGCGACGTCTTCATGGCGTTCGGGAAACGTGCTTTGTCGAGCGACGGCGGCGGCGAGGATGCGAATGGCGAGGCACTGGAGAGTTGCGAGAAGGGATTCGGTGTGGCGCGAACAAGGGAAGAGAAGGTGGAGATCCGAGGGTTGAGTTGGAAAGTGCTTAGGTTTATCGCTGTGATTCATTTGCAGAAGGAGGAGTTTGAGAGTGTGATTAAGTGTGTGAAGGTTTTGAGAGAGAGCGCTGATGACGGTGATGAGCATCCGAGTCTTTCGGTGCTGGCGATGAAGGCGTGGTTAGGGTTGGGAAGGCATGGAGAGGCGGAGAAGGAGTTGAGGGGGATGGTGATTGACAAAGGGATTCCGGAGGGGGTTTGGGTGTCGGCGGTGGAGGCCTATTTCGCGGCGGCGGGGACGGCAGGGGTGGAGACCGTGAAGGGGGTGTTCTTGGGGTTGTTGGGAAGGTGCCATGTTAGTGCTGGTTTGGCGGTGAGGGTGGTGCATAGGGTGGTTGGGTGA
>Glyma09g38193.1 sequence type=predicted peptide gene model=Glyma09g38193 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LRSLHRDTVANNRSLSEVEAIVKQLEARSADKPPPETAASDLRQCLAQLSQLVPFPNLLKLQIWKLSYRLWNACVDISNTTAIRSSSSATTAATESQAELRHIAADLLSIAGDVFMAFGKRALSSDGGGEDANGEALESCEKGFGVARTREEKVEIRGLSWKVLRFIAVIHLQKEEFESVIKCVKVLRESADDGDEHPSLSVLAMKAWLGLGRHGEAEKELRGMVIDKGIPEGVWVSAVEAYFAAAGTAGVETVKGVFLGLLGRCHVSAGLAVRVVHRVVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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