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Report for Sequence Feature Glyma09g38176

Feature Type:gene_model
Chromosome:Gm09
Start:43604342
stop:43608282
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g38176
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25480AT Annotation by Michelle Graham. TAIR10: Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:9235591-9236598 REVERSE LENGTH=264 SoyBaseE_val: 2.00E-75ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11177Panther CHITINASE JGI ISS
PTHR11177:SF87Panther JGI ISS
UniRef100_G7KSH3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich glycoprotein-like protein n=1 Tax=Medicago truncatula RepID=G7KSH3_MEDTR SoyBaseE_val: 1.00E-134ISS
UniRef100_I1N432UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N432_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g38176
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38176 not represented in the dataset
Glyma09g38176 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38176
ParalogEvidenceComments
Glyma18g48200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38176 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g246300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g38176
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma09g38176
>Glyma09g38176.2   sequence type=transcript   gene model=Glyma09g38176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTAACTATAAGTATAACTACCCCTTTTCTCTATCCTTTTTCAGAAGGATCACTTAACTGAGTGTGCAGCATTTCCCAGTCATGGATTCTCTGTCTCTTCTCCTCTCCCCTTATCCACTCTCCATCAAAACCCCGAAATTCCCCACCTTCAAACCCTTCTCCCATTTCTCAAACCATAGCAAACCACACTCTCCAAAATCCCAATTACCCTCTTTTTCTGCACTCCAAACACCTTCTCTTAACTCACTCCAAACCCCCTTAGCAAAACCTTTCTTCTCATTTACCATGCTCAACCTCTTCACTCCACTTCCCTGCCTCGCTGACGTGGCCTCCGACGACGCCGGCAAAATCAACCTCGAATCGGTTCTGGTTTCCATCGACAACTTCTTCAACCGCTACCCGTTTTTCGTCGCCGGGTGCACCTTTATTTGGCTGGTGGTGATTCCTCTGGCGGAAGAGTATTTGAAGAAGTGCAAGTTTGTGTCGGCGATTGACGCGTTTAGGAAGCTCCGCGATGACCCGAATGCGCAGCTGCTGGACATAAGGGACCAGAAGAACGTGCGGTTTCTGAAGTCGCCGAATTTAAAAATGTTTGAGAAGGAAGTGGCGCAGGTCGAGTTCGCTGAGGATGGGAATGAGGATGAGTTTGTGAACAAGGTGTTGGGGAGGTTCAAGGACGCGCCAAACACTGTTATATGTGTTTTGGACAGTTTTGACAGTAATTCTTTGAAAGTTGCTGAGTTACTATTCAAGAATGGTTTCAAAGAGGCCTATGCAATCAGAGGTGGAGTTAGAGGCCAGCAAGGTTGGATGGCTATACAGGATTCCCTTTTGCCCCCTTCTGTGCATATAAGGAAAAGGGTAAAAGCTTCAAAGAAACTTGACACAAATGGAAATGGAGCCATCCAGCAAAATGATAGTAACAATAAGAGTTCCTTATCCCAAGATATATCTTCTGTTGAAAACCAAACAACAGACTTTGGTCATGTGAAAAGCTCTGTAGAGTCCATTCCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAATTGAGCTACTTCATTGTTCTATTTTTGGATGGACAACGACCTGGCATCCTTTCAATGATTGAAGTAACCTGGCATCCTTTCAATGATTGAAGTAATATTCCAACTCCCAAGCCATTATGGGCTAGAAGACGATAGAGAATGGTTTAAATGATAGAAATCTGGAAGAAAAACAGGATGTATTGAATTAAAATGACAGTTTGGAAACCTCTCATATCAGAAATTATAACTAAGACTGAAAGATGCTGAATGAAATTATAACAATTTCGGATAGAGATGTCCATTGGAGTACATAGATTGGTTCCGATAATAGTGATTCCCAACTTTGTCAATACATTTGTGTTCTCTTTTATATATGCCCAATATACTAAAATAATGGAAAAAGACTATAAACATCTTCATAAATTTGATTGATTTTATTTTGATATTTGCTTGCATGATTCGAAAACATGAAACAGAGCCACAGTGAACATCCATGTTTGTGAAGTGTGTGCATCGTACTGCTTTCTTACATTTTATATTTTGGAATCCCGTTCTCTGATAAAATGAGAATTCTCCCCATTTTTTTCTTTCTTTCTTTGCAGTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCTCAATAGTTTTGTTGGTTATACCATACTCAACTGACATCTGTTTGGCAGAAATGATTTCTGTAAAGACAGAAAGACAATTTGGTGACCGTGAAATCGTTTATTTCTAAACTTACAATTATTCTTTTTCAACCTCTTGTTGAGTTTTAGAGAGTGTAAAGCACGCAATCCATAAACACTGTACAAGCAGAATCAATCTAGATGTTTAGTATTTATACTCTTAAACAAAATTTTAGCAACAATGAGAAGTGAATTAGTCGAGCAATTGATAGGTCTTAGGAGATTGGCATAAAAAAATGTGAAGAAAAATGAAGGTAATTATTAAAGCCATTAAATGTTGCATCTTTGTAAGAATAAAAATAAAAGATGATGGACATTCATA
Coding sequences of Glyma09g38176
>Glyma09g38176.1   sequence type=CDS   gene model=Glyma09g38176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTCTGTCTCTTCTCCTCTCCCCTTATCCACTCTCCATCAAAACCCCGAAATTCCCCACCTTCAAACCCTTCTCCCATTTCTCAAACCATAGCAAACCACACTCTCCAAAATCCCAATTACCCTCTTTTTCTGCACTCCAAACACCTTCTCTTAACTCACTCCAAACCCCCTTAGCAAAACCTTTCTTCTCATTTACCATGCTCAACCTCTTCACTCCACTTCCCTGCCTCGCTGACGTGGCCTCCGACGACGCCGGCAAAATCAACCTCGAATCGGTTCTGGTTTCCATCGACAACTTCTTCAACCGCTACCCGTTTTTCGTCGCCGGGTGCACCTTTATTTGGCTGGTGGTGATTCCTCTGGCGGAAGAGTATTTGAAGAAGTGCAAGTTTGTGTCGGCGATTGACGCGTTTAGGAAGCTCCGCGATGACCCGAATGCGCAGCTGCTGGACATAAGGGACCAGAAGAACGTGCGGTTTCTGAAGTCGCCGAATTTAAAAATGTTTGAGAAGGAAGTGGCGCAGGTCGAGTTCGCTGAGGATGGGAATGAGGATGAGTTTGTGAACAAGGTGTTGGGGAGGTTCAAGGACGCGCCAAACACTGTTATATGTGTTTTGGACAGTTTTGACAGTAATTCTTTGAAAGTTGCTGAGTTACTATTCAAGAATGGTTTCAAAGAGGCCTATGCAATCAGAGGTGGAGTTAGAGGCCAGCAAGGTTGGATGGCTATACAGGATTCCCTTTTGCCCCCTTCTGTGCATATAAGGAAAAGGGTAAAAGCTTCAAAGAAACTTGACACAAATGGAAATGGAGCCATCCAGCAAAATGATAGTAACAATAAGAGTTCCTTATCCCAAGATATATCTTCTGTTGAAAACCAAACAACAGACTTTGGTCATGTGAAAAGCTCTGTAGAGTCCATTCCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAATTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCTCAATAG

>Glyma09g38176.2   sequence type=CDS   gene model=Glyma09g38176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTCTGTCTCTTCTCCTCTCCCCTTATCCACTCTCCATCAAAACCCCGAAATTCCCCACCTTCAAACCCTTCTCCCATTTCTCAAACCATAGCAAACCACACTCTCCAAAATCCCAATTACCCTCTTTTTCTGCACTCCAAACACCTTCTCTTAACTCACTCCAAACCCCCTTAGCAAAACCTTTCTTCTCATTTACCATGCTCAACCTCTTCACTCCACTTCCCTGCCTCGCTGACGTGGCCTCCGACGACGCCGGCAAAATCAACCTCGAATCGGTTCTGGTTTCCATCGACAACTTCTTCAACCGCTACCCGTTTTTCGTCGCCGGGTGCACCTTTATTTGGCTGGTGGTGATTCCTCTGGCGGAAGAGTATTTGAAGAAGTGCAAGTTTGTGTCGGCGATTGACGCGTTTAGGAAGCTCCGCGATGACCCGAATGCGCAGCTGCTGGACATAAGGGACCAGAAGAACGTGCGGTTTCTGAAGTCGCCGAATTTAAAAATGTTTGAGAAGGAAGTGGCGCAGGTCGAGTTCGCTGAGGATGGGAATGAGGATGAGTTTGTGAACAAGGTGTTGGGGAGGTTCAAGGACGCGCCAAACACTGTTATATGTGTTTTGGACAGTTTTGACAGTAATTCTTTGAAAGTTGCTGAGTTACTATTCAAGAATGGTTTCAAAGAGGCCTATGCAATCAGAGGTGGAGTTAGAGGCCAGCAAGGTTGGATGGCTATACAGGATTCCCTTTTGCCCCCTTCTGTGCATATAAGGAAAAGGGTAAAAGCTTCAAAGAAACTTGACACAAATGGAAATGGAGCCATCCAGCAAAATGATAGTAACAATAAGAGTTCCTTATCCCAAGATATATCTTCTGTTGAAAACCAAACAACAGACTTTGGTCATGTGAAAAGCTCTGTAGAGTCCATTCCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAATTGA
Predicted protein sequences of Glyma09g38176
>Glyma09g38176.1   sequence type=predicted peptide   gene model=Glyma09g38176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLSLLLSPYPLSIKTPKFPTFKPFSHFSNHSKPHSPKSQLPSFSALQTPSLNSLQTPLAKPFFSFTMLNLFTPLPCLADVASDDAGKINLESVLVSIDNFFNRYPFFVAGCTFIWLVVIPLAEEYLKKCKFVSAIDAFRKLRDDPNAQLLDIRDQKNVRFLKSPNLKMFEKEVAQVEFAEDGNEDEFVNKVLGRFKDAPNTVICVLDSFDSNSLKVAELLFKNGFKEAYAIRGGVRGQQGWMAIQDSLLPPSVHIRKRVKASKKLDTNGNGAIQQNDSNNKSSLSQDISSVENQTTDFGHVKSSVESIPEVKTGSVASSSPYPNYPDLKPPSSPTPSKPQ*

>Glyma09g38176.2   sequence type=predicted peptide   gene model=Glyma09g38176   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLSLLLSPYPLSIKTPKFPTFKPFSHFSNHSKPHSPKSQLPSFSALQTPSLNSLQTPLAKPFFSFTMLNLFTPLPCLADVASDDAGKINLESVLVSIDNFFNRYPFFVAGCTFIWLVVIPLAEEYLKKCKFVSAIDAFRKLRDDPNAQLLDIRDQKNVRFLKSPNLKMFEKEVAQVEFAEDGNEDEFVNKVLGRFKDAPNTVICVLDSFDSNSLKVAELLFKNGFKEAYAIRGGVRGQQGWMAIQDSLLPPSVHIRKRVKASKKLDTNGNGAIQQNDSNNKSSLSQDISSVENQTTDFGHVKSSVESIPEVKTGSVASSSPYPN*






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