SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25500 | AT | Annotation by Michelle Graham. TAIR10: formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051 | SoyBase | E_val: 0 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0051016 | GO-bp | Annotation by Michelle Graham. GO Biological Process: barbed-end actin filament capping | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0051015 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin filament binding | SoyBase | N/A | ISS |
| KOG1922 | KOG | Rho GTPase effector BNI1 and related formins | JGI | ISS | |
| PTHR23213 | Panther | FORMIN-RELATED | JGI | ISS | |
| PF02181 | PFAM | Formin Homology 2 Domain | JGI | ISS | |
| UniRef100_A2Q5W8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Actin-binding FH2 n=1 Tax=Medicago truncatula RepID=A2Q5W8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233875F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233875F related cluster n=1 Tax=unknown RepID=UPI000233875F | SoyBase | E_val: 0 | ISS |
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Glyma09g38160 not represented in the dataset |
Glyma09g38160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g48210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g246200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g38160.2 sequence type=CDS gene model=Glyma09g38160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACCTTCTTCTTGTACCTTTTCCTTTTCTTCTTGTTATGTGCACTTCAACAACTAGCCTCATCCCAACCCTTCTTCCTCAATAGAAGGATCCTCCATGAACCCTTTGTTCCTTTAACCAGTACTCTTCCACCTTCTGAGGCACCAAAGCCACAACCTCTTCATGCTTCTCCTTCAAGCCAAAAACAAAAACCAAATCCAAAATATCCATCATCTACCATTCCCACAACCTCTACCACTGCCACAGCAGTACCAACACCAACAACAGCTACAACTACAACACAATCACCATTTTTCCCATTATACCCTTCTTCCCCTCCACCTCCTTCTCCAATCACCTTTGCTTCCTTCCCTGCCAACATTTCCTCTCTCATTCTCCCTCACTCTCCCAAACCCAATTCTTCCTCCAACAAACTCCTCCCTGTTGCTCTCTCCGCCGTCGCCGCTGCGGTCCTCGCTATAATCATCTCCGCCGTCGTCTGTTACCGCCGTCGCCGGAACCATCCCCTCGCCGCCGAAGGCAAACTTATCCGATCCGACACCGACCTCCGCCTGCTCCGGCACAATGCCGAAACCGCCGTCGAAACTCGCAAGCTCCGGCACACGTCTTCCGCCAGCTCCGAGTTTCTATATCTAGGAACAGTAGTTAACTCGCACGTAACTGACGATAGCGCCGACGTCTCCGACGCCCGCGGCGACCGGAAAATGAAATCGCCGGAGCTCCGGCCACTTCCGCCGCTCGCGCGACAAGCTTCCTTGCCGCCGCCGCCGCCGTGCGAGGAGGCGGGGTTCACCACCGCGGAGGAGGAGGGTGAGGACGATGAGGAGTTTTACTCGCCGAGAGGCTCCTCGTTAGGAGGCTCCGGCGGAACCGGATCGGGTTCCCGGCGAATTTTCGCCGCTGGAGGAAGAAGCGTCATCTCTAGTTCGTGCTCTTCCTCTTCTTCCGCCTCGCCGGAAAGGTCACACTCTATCGCGAATTCGCCGTCGGCGAGTTCGAGTTCCCGGAGAACACAGCCAAAGTCTCCTGAAAATTACAACCACCAACACGTACAATCTTCTTCTTCTCCTTCGTTGGGCTCAACACCAGAAAGGGTTTTTACTGAACATAATTCAAATGAAGCATTAAGTGCATGTACACATGCACATGCATCATCATCATCATCATCATTACATGAAGGAACGTTGGAGAAAAATGAAAATGCATTATCATCATCACTACCACCACCACCACCACCACCGAGACTATCTAATGCTTCTTCGTCTTCTTCGGCTTTTTCTCTTCCCTCTTCGCCGGAGAAGGTGACACGTAATAACACTTTCGATCAGTCTCCAAGAATGTCGAGTGTCTCCGACGGACTAATGTTACCGGGTTTGTCATCGGTGCCTTTGTCACCCGCCCTATTGTCATCACCGGAAACCGAAAGGGGAACTTTTAATGGATGGAGAACAAGTTCTTTTGGTGCGGCTGCGCCGCAGAGGAAACAATGGAATCTTCCGGTGCTATCACTAACACCACCCTTTGATGAAATTGGAACGGTTCCGGCTCCTCCACCTTTGCCACAGAGGAAGCACTGGGAGATTCCGGGTTCTGGTCCGCCACCGCCGCCACCATTGCCACGGCAAAGGAAGCAGTGGGGAGTGCCAGCGCTTGCACTGGGGTCCTCGACACCGATTTCGAGGCCGCCAGAATTGTTGCCTCCTTCGAGACCTTTTGTGTTGCAAAACCAAGGAAGCAATGTCGAGTTGCCGGCGAGTTTGGGGGAAATTGAAGAGACTAGTAAACCAAAATTGAAGCCCCTGCATTGGGACAAAGTAAGAACCACCTCTGATCGTCAAATGGTGTGGGATCAGATGAAGTCCCGCTCGTTTAAATTGAATGAGAAAATGATTGAAACATTGTTTGTAGTGAACACACCAAACCCAAACTCAGTTTTTCACCAGCCGAATCAGGAGGAAAGAGTACTCGATCCTAAAAAGTCTCAGAATATTTCAATCTTGCTGAAAGCACTTAATGTCACTATAGAAGAAGTGTGTGAAGCACTCTTAGAAGGTAGTACTGATACACTTGGAACAGAATTACTTGAAAGCTTATTAAGAATGGCACCAAGCAAGGAAGAAGAATGTAAGTTGAAGGAACATAAAGATGACTCACCAACCAAGCTTGGTCCGGCTGAAATTTTTTTGAAGGCAGTGCTTAATGTACCTTTTGCATTTAAAAGGATTGAAGCGATGCTTTATATAGCCAATTTTGAGTTTGAAGTGGAGTATCTTAGGACATCCTTTCAAACTCTACAGACTGCCTGTGAAGAGCTGCGACATTGTAGAATGTTCATGAAGCTTCTGGAGGCTGTACTTAAAACTGGGAACCGCATGAATGTGGGGACCAACCGCGGGGATGCAGAGGCATTCAAACTTGATACTCTTCTCAAACTGGTTGACGTCAAAGGCGCAGATGGGAAAACCACTCTACTGCATTTTGTTGTACAGGAAATTATCCAAACTGAAGGTGCTTGTCTCTCGGGCACTAATCAAACTCCAAGCTCTACTTTGAGTGGAGATGCCAAGTGTAGGAGGCTTGGACTACAAGTTGTATCAAGCCTGAGTTCCGAGCTAGCAAATGTGAAGAAGGCAGCAGCTATGGATTCTGAAGTTCTCAGCAGTGATGTCTTGAAACTTTCCAAAGGAATTGCTAGCTTAGCAGAGGCTGTGCAATTAAACCAAACCATGGCATCAGATGAAAGCAGTCAGAAATTCACAGAATCAATGAACAAATTCATCAGAATGGCTGAGGAGGAAATTCCAAAAATTCAAGCCCAAGAAAGTGTTGCTTCCTCCCATGTGAAGGAGATTACAGAGTATTTTCTTGGGAACTTGACAAAGGAAGAAGCTCATCCATTTAGAATATTCATGGTTGTAAGAGACTTCCTAGCAGTTCTTGACCGGGTCTGCAAAGAAGTTGGAATGATAAATGAGAGAACTATGGTTAGTTCAGCTCATAAATTCCCTGTGCCAGTTAACCCTATGCTTCCGCAACCCCTTCCTGGATTACATGAGAGACAACAGTATAATGACTCTTCAGATGATGATAGTTCATCTTCATCACCATAG
>Glyma09g38160.2 sequence type=predicted peptide gene model=Glyma09g38160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTFFLYLFLFFLLCALQQLASSQPFFLNRRILHEPFVPLTSTLPPSEAPKPQPLHASPSSQKQKPNPKYPSSTIPTTSTTATAVPTPTTATTTTQSPFFPLYPSSPPPPSPITFASFPANISSLILPHSPKPNSSSNKLLPVALSAVAAAVLAIIISAVVCYRRRRNHPLAAEGKLIRSDTDLRLLRHNAETAVETRKLRHTSSASSEFLYLGTVVNSHVTDDSADVSDARGDRKMKSPELRPLPPLARQASLPPPPPCEEAGFTTAEEEGEDDEEFYSPRGSSLGGSGGTGSGSRRIFAAGGRSVISSSCSSSSSASPERSHSIANSPSASSSSRRTQPKSPENYNHQHVQSSSSPSLGSTPERVFTEHNSNEALSACTHAHASSSSSSLHEGTLEKNENALSSSLPPPPPPPRLSNASSSSSAFSLPSSPEKVTRNNTFDQSPRMSSVSDGLMLPGLSSVPLSPALLSSPETERGTFNGWRTSSFGAAAPQRKQWNLPVLSLTPPFDEIGTVPAPPPLPQRKHWEIPGSGPPPPPPLPRQRKQWGVPALALGSSTPISRPPELLPPSRPFVLQNQGSNVELPASLGEIEETSKPKLKPLHWDKVRTTSDRQMVWDQMKSRSFKLNEKMIETLFVVNTPNPNSVFHQPNQEERVLDPKKSQNISILLKALNVTIEEVCEALLEGSTDTLGTELLESLLRMAPSKEEECKLKEHKDDSPTKLGPAEIFLKAVLNVPFAFKRIEAMLYIANFEFEVEYLRTSFQTLQTACEELRHCRMFMKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIQTEGACLSGTNQTPSSTLSGDAKCRRLGLQVVSSLSSELANVKKAAAMDSEVLSSDVLKLSKGIASLAEAVQLNQTMASDESSQKFTESMNKFIRMAEEEIPKIQAQESVASSHVKEITEYFLGNLTKEEAHPFRIFMVVRDFLAVLDRVCKEVGMINERTMVSSAHKFPVPVNPMLPQPLPGLHERQQYNDSSDDDSSSSSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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