SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38510 | AT | Annotation by Michelle Graham. TAIR10: ATPase, V1 complex, subunit B protein | chr4:18011155-18014897 REVERSE LENGTH=494 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0015991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport | SoyBase | N/A | ISS |
| GO:0030835 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of actin filament depolymerization | SoyBase | N/A | ISS |
| GO:0046034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP metabolic process | SoyBase | N/A | ISS |
| GO:0051017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly | SoyBase | N/A | ISS |
| GO:0051693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament capping | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016469 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex | SoyBase | N/A | ISS |
| GO:0033178 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, catalytic domain | SoyBase | N/A | ISS |
| GO:0033180 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V1 domain | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0046933 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism | SoyBase | N/A | ISS |
| GO:0046961 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism | SoyBase | N/A | ISS |
| GO:0051015 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin filament binding | SoyBase | N/A | ISS |
| KOG1351 | KOG | Vacuolar H+-ATPase V1 sector, subunit B | JGI | ISS | |
| PTHR15184 | Panther | ATP SYNTHASE | JGI | ISS | |
| PTHR15184:SF11 | Panther | ATP SYNTHASE SUBUNIT BETA VACUOLAR | JGI | ISS | |
| PF00006 | PFAM | ATP synthase alpha/beta family, nucleotide-binding domain | JGI | ISS | |
| PF00306 | PFAM | ATP synthase alpha/beta chain, C terminal domain | JGI | ISS | |
| PF02874 | PFAM | ATP synthase alpha/beta family, beta-barrel domain | JGI | ISS | |
| UniRef100_A6Y950 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar H+-ATPase B subunit n=2 Tax=Papilionoideae RepID=A6Y950_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L655 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L655_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g38110 not represented in the dataset |
Glyma09g38110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g48280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g245700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g38110.2 sequence type=transcript gene model=Glyma09g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTCCCCGATGGTTCCTGAATTTGTTTGGCCCATCTATTAGATCTGTCACATACACGCCCACATCAACCATCTTTTCTCTTCGCTGTTCCTCTTCAGATCAAACGCACACAGTTACGCTCTTCAAATCAATCTCTTCTCAGAAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCGGAAACTGATGATATAATAGCAAGGTCTTATACCTTAGTCACATGCTCAATCATCTTGTAATGACCGTGACGATTGTTTTATTTCTTAGATTTCTCATCCAACAATCTTTATTTCTTCTATCCACAGCATATTCATTATATATAATAAAAGGTTTGAGTCTGTTTGAGTGTCTCATATTTTGATTTCCTCAGTTAGTTAGAATGAAGACCCCATAGATATTTCCATTTCCTGTGCCATTTTTTTTTCTGGGTGATGGGGAAAATTAGTTGTCGCCAGTGATGGCATTTAAATGTATTGTGGGATTTCAGTGCTGTTAGTATTTTTTTATTTCCCATCTATGTTGTTTATTAAATAAGTATCTGTTTTTTTTTTGTTTGGTTATTCATGATATTTATATTTATAATCAGGACAATTGCGGACACTTTGATTTTT
>Glyma09g38110.1 sequence type=CDS gene model=Glyma09g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCGGAAACTGA >Glyma09g38110.2 sequence type=CDS gene model=Glyma09g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCGGAAACTGA
>Glyma09g38110.1 sequence type=predicted peptide gene model=Glyma09g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN* >Glyma09g38110.2 sequence type=predicted peptide gene model=Glyma09g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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