Glyma09g38040 - SoyBase

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Report for Sequence Feature Glyma09g38040

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43528142
stop:	43534281
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17070	AT	Annotation by Michelle Graham. TAIR10: peptidyl-prolyl cis-trans isomerases \| chr4:9595523-9598066 REVERSE LENGTH=343	SoyBase	E_val: 3.00E-150	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
KOG0884	KOG	Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI		ISS
UniRef100_A2Q1W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase, cyclophilin type n=1 Tax=Medicago truncatula RepID=A2Q1W0_MEDTR	SoyBase	E_val: 2.00E-175	ISS
UniRef100_I1L648	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L648_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38040

Paralog	Evidence	Comments
Glyma18g48350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g245200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38040

Limit To All Plant Sequences

>Glyma09g38040.1   sequence type=CDS   gene model=Glyma09g38040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTCGCCAAAACGACTCAGATTTCGGTAGATTCGCGATTCTCGTCCTCTTCTTGATAGGCGCAATCTCCTGCTCCGTGATCTACCTTTTCCTTACGGTGGTCTTCAGTCCCAGCCCTGAATCTCTTCCTTCAGTGGATGATCATGTGGTGGGGGTTGCAGAAGAGGAGCAATGCTGCAGAGGGATTGAACATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGCTCTGAATTTAGGTTGAATTCCTCGGAGGAATGTTGCATGGCTTGTAAGCGAATGTGTAGCGGTGATGGAGGACCTTGTATGTGTAATTCCTGGGTGTATTGTGGAGATAGAGAGGCTTGTGGACCTAGATTTGGTGAGTGTTGGTTAAAAAAACAAAAGGATGCCTTAAATCCTGATCGACGAGACTCCGGAGATCTAGTTATGTGGACTTCTGGGTTTGTCTTTGATAAGGAAGAGGGAACTGTTGGTATGGAAACTGACCATGGAATTCTTCGAATAAAACTTTTGCCTGAATGTGCTCCATATTCTGTTTCCTACATCCTTGAGCTGTTGGCGTTGCCTCATTGTGTTGGTTGCCATATTCATCGTGCTGAAAGCCGAGGAAGCTTTTGGGATACAGAAGGAAACCACATAAAAAAGACTCCATATGGTCCTCCTTTCGCACTTATTCAAGGAACATTGGAATCCTATGGGTCTATGTTCAAGGATATTCCAGAAGAGCACTGTCCTACCATAAGAAGAGGATCTGTTGCATGGGTTGGTTCTGGTCCAGAATTCTTTATCAGCCTCGCCGATCACGCAGAATGGAGAAATGCATACACTGTGTTTGGCTCTGTTCTATCTGAAGATATGGAAATTTTAGAGAAAATTGCTCAGCTTCCAACTAAATCAGAAATTTGGAATAATATTAAAGTCTCTGTCTTAGAGAACCCAATTTCAGTACGGTTTCGGAGAATGAACAAAAAGTCTTAA

Predicted protein sequences of Glyma09g38040

Limit To All Plant Sequences

>Glyma09g38040.1   sequence type=predicted peptide   gene model=Glyma09g38040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRRQNDSDFGRFAILVLFLIGAISCSVIYLFLTVVFSPSPESLPSVDDHVVGVAEEEQCCRGIEHLELWGDAVKWGSEFRLNSSEECCMACKRMCSGDGGPCMCNSWVYCGDREACGPRFGECWLKKQKDALNPDRRDSGDLVMWTSGFVFDKEEGTVGMETDHGILRIKLLPECAPYSVSYILELLALPHCVGCHIHRAESRGSFWDTEGNHIKKTPYGPPFALIQGTLESYGSMFKDIPEEHCPTIRRGSVAWVGSGPEFFISLADHAEWRNAYTVFGSVLSEDMEILEKIAQLPTKSEIWNNIKVSVLENPISVRFRRMNKKS*

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