Glyma09g37980 - SoyBase

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Report for Sequence Feature Glyma09g37980

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43493291
stop:	43494378
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG3142	KOG	Prenylated rab acceptor 1	JGI		ISS
PF03208	PFAM	PRA1 family protein	JGI		ISS
UniRef100_UPI000233875C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233875C related cluster n=1 Tax=unknown RepID=UPI000233875C	SoyBase	E_val: 5.00E-178	ISS

Expression Patterns of Glyma09g37980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37980

Paralog	Evidence	Comments
Glyma18g48410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g244600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g37980

Limit To All Plant Sequences

>Glyma09g37980.2   sequence type=transcript   gene model=Glyma09g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTGGATGGACACACTCACACCACATGGGCCCAAAAAAATTAAGTGAAGAGCCACATTACAAACAACAATGAAGGTTCCTTAATATTCTACTTTTCTTCACGAAATTTCCTTGATATTCGCCAAGCATGTCTTTATGACAATGACAATAGGGATCTTGTGTCCTGGACTAGAAAATAAATTAAAACGAGTTAAGATTCTATATACTTCTGAATTTCATTCAATTGCACAACATGTACCCATCTTACTATTATCCTTCTAGTTTCTGTGGGGCATATGCAACAAACTTCTCCAATTTGTGGTTCAATAGAAGAGGTACCTCAATTGAGCCATTCTCTGATCCTCCAAAGTCCACTTCAAGTGTTATGGCAAACTTTGGAACTACACATAGAACACCCACCACTACCACTACACCTTCACCACCCTCCTTAGACCCTTATGAACCAAAAGCGCCTCATGAAAAGTTATACACTGATTTCAAAATCTACTGGCCCTTCACCACGCCCTTGACTTCAGAAGCTGCAGCAATTCGTGTCATCAGAAACTTGGAGAATCTTGGCTTGTACTACACACTCTTTGTGTGGATCATACTCTTCATAGTCCTCATTCCTCATCTGTTTGCGACATTTGTGCAGCTGATTTTGACTGAGGCAGGGATTCAGCTTGCTGTGACTTTGGCTTGTGCTGTGCCTTTTCTTTTGGTGCATGCAGTTTTTTGGGTTAGTCATCATGGCTTTGAGATTGAGGATGATTCTGATACCAAAGAAATGGCTCCTCTTGTTGGCCATAATAGATGTACATGTGGAGCCAAGGGTAGTCTAGAGAATGTTTAATGTTTGATTTTGGTTGTACATACTGCATAGTCCACTTCATACTTTTAAATTGCAAGTTAAAAGGAATTGTTCATACTTTAT

Coding sequences of Glyma09g37980

Limit To All Plant Sequences

>Glyma09g37980.1   sequence type=CDS   gene model=Glyma09g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCCATCTTACTATTATCCTTCTAGTTTCTGTGGGGCATATGCAACAAACTTCTCCAATTTGTGGTTCAATAGAAGAGGTACCTCAATTGAGCCATTCTCTGATCCTCCAAAGTCCACTTCAAGTGTTATGGCAAACTTTGGAACTACACATAGAACACCCACCACTACCACTACACCTTCACCACCCTCCTTAGACCCTTATGAACCAAAAGCGCCTCATGAAAAGTTATACACTGATTTCAAAATCTACTGGCCCTTCACCACGCCCTTGACTTCAGAAGCTGCAGCAATTCGTGTCATCAGAAACTTGGAGAATCTTGGCTTGTACTACACACTCTTTGTGTGGATCATACTCTTCATAGTCCTCATTCCTCATCGTAAGTCGTCATTGATTTTGTTGGTCATCATGACCTATGTGATAGTTCTTTATTGTTTAGTTCTAAGGGCACACCCCAAATCTGTTTTCCTTCATAGAACCATAGATAAAAAGTTTGTGTTGGCTTTGCTAGTGTTTGCGACATTTGTGCAGCTGATTTTGACTGAGGCAGGGATTCAGCTTGCTGTGACTTTGGCTTGTGCTGTGCCTTTTCTTTTGGTGCATGCAGTTTTTTGGGTTAGTCATCATGGCTTTGAGATTGAGGATGATTCTGATACCAAAGAAATGGCTCCTCTTGTTGGCCATAATAGATGTACATGTGGAGCCAAGGGTAGTCTAGAGAATGTTTAA

>Glyma09g37980.2   sequence type=CDS   gene model=Glyma09g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCCATCTTACTATTATCCTTCTAGTTTCTGTGGGGCATATGCAACAAACTTCTCCAATTTGTGGTTCAATAGAAGAGGTACCTCAATTGAGCCATTCTCTGATCCTCCAAAGTCCACTTCAAGTGTTATGGCAAACTTTGGAACTACACATAGAACACCCACCACTACCACTACACCTTCACCACCCTCCTTAGACCCTTATGAACCAAAAGCGCCTCATGAAAAGTTATACACTGATTTCAAAATCTACTGGCCCTTCACCACGCCCTTGACTTCAGAAGCTGCAGCAATTCGTGTCATCAGAAACTTGGAGAATCTTGGCTTGTACTACACACTCTTTGTGTGGATCATACTCTTCATAGTCCTCATTCCTCATCTGTTTGCGACATTTGTGCAGCTGATTTTGACTGAGGCAGGGATTCAGCTTGCTGTGACTTTGGCTTGTGCTGTGCCTTTTCTTTTGGTGCATGCAGTTTTTTGGGTTAGTCATCATGGCTTTGAGATTGAGGATGATTCTGATACCAAAGAAATGGCTCCTCTTGTTGGCCATAATAGATGTACATGTGGAGCCAAGGGTAGTCTAGAGAATGTTTAA

Predicted protein sequences of Glyma09g37980

Limit To All Plant Sequences

>Glyma09g37980.1   sequence type=predicted peptide   gene model=Glyma09g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPSYYYPSSFCGAYATNFSNLWFNRRGTSIEPFSDPPKSTSSVMANFGTTHRTPTTTTTPSPPSLDPYEPKAPHEKLYTDFKIYWPFTTPLTSEAAAIRVIRNLENLGLYYTLFVWIILFIVLIPHRKSSLILLVIMTYVIVLYCLVLRAHPKSVFLHRTIDKKFVLALLVFATFVQLILTEAGIQLAVTLACAVPFLLVHAVFWVSHHGFEIEDDSDTKEMAPLVGHNRCTCGAKGSLENV*

>Glyma09g37980.2   sequence type=predicted peptide   gene model=Glyma09g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPSYYYPSSFCGAYATNFSNLWFNRRGTSIEPFSDPPKSTSSVMANFGTTHRTPTTTTTPSPPSLDPYEPKAPHEKLYTDFKIYWPFTTPLTSEAAAIRVIRNLENLGLYYTLFVWIILFIVLIPHLFATFVQLILTEAGIQLAVTLACAVPFLLVHAVFWVSHHGFEIEDDSDTKEMAPLVGHNRCTCGAKGSLENV*

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