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Report for Sequence Feature Glyma09g37940

Feature Type:gene_model
Chromosome:Gm09
Start:43473054
stop:43474055
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g37940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18870AT Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein | chr3:6508515-6509339 REVERSE LENGTH=274 SoyBaseE_val: 4.00E-46ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13068Panther CGI-12 PROTEIN-RELATED JGI ISS
PF02536PFAM mTERF JGI ISS
UniRef100_I1L638UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L638_SOYBN SoyBaseE_val: 2.00E-74ISS
UniRef100_Q2L8W8UniRef Annotation by Michelle Graham. Most informative UniRef hit: MTERF-like protein n=1 Tax=Brassica napus RepID=Q2L8W8_BRANA SoyBaseE_val: 6.00E-20ISS

Expression Patterns of Glyma09g37940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37940
ParalogEvidenceComments
Glyma18g48450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g244100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g37940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g37940
>Glyma09g37940.2   sequence type=CDS   gene model=Glyma09g37940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAACACGCGCGTGGACAAGCTGCATACGAAAGTTCTGTTCATGCAAGAGTTGGGGTTTTTGTACGAGAAAGCACTCAGAGCTTGTGCTAGGTTACCCGCAATTTTCGGATATGACGTGGAGAACAATCTGTGGCCCAAGTTTGTGTATCTTGTGAAGGAAATGGAGAGAGATTTGGAGGAGCTGAATAGGTTTCCTCAATACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAGGAGAGGGGTGTTAGGATTCCCTTAAACAGAATGTTGATGTGGGGTAATGAAAAGTTCTACGCCAAGTGGAAGTAA
Predicted protein sequences of Glyma09g37940
>Glyma09g37940.2   sequence type=predicted peptide   gene model=Glyma09g37940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNTRVDKLHTKVLFMQELGFLYEKALRACARLPAIFGYDVENNLWPKFVYLVKEMERDLEELNRFPQYFGFSLKERIVPRHLHLKERGVRIPLNRMLMWGNEKFYAKWK*






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