SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma09g37930

Feature Type:gene_model
Chromosome:Gm09
Start:43459281
stop:43466618
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44745AT Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr2:18447482-18449004 REVERSE LENGTH=218 SoyBaseE_val: 1.00E-66ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_B0LUR6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR6_SOYBN SoyBaseE_val: 2.00E-129ISS
UniRef100_C6T2M1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2M1_SOYBN SoyBaseE_val: 2.00E-142ISS

LocusGene SymbolProtein Name
WRKY121 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g48461 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g244000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g37930.3   sequence type=transcript   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGAATAGACCACCTTAAAGAAAAAGGAGAAGGAATAATTCTAAGAGTTAACATAACTGGAACACATGTAGTAGCAGTTGACCCAAGTACAAAACCCTTCTTGTCTCGGCCTGCGGAATTACCCTTAATTTCTCTGTGTTCCTTCCAATCACATGGCATAGAATTTAAGGTTTTTTAACTAGAAGAAGATCTAATTAGCTATCTAGCTAGGAAGAAGACGAAGCAAATTAAAGACTAGTTAATTAGTGAGTCAAAAGTGGGATATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAGCTAGCAAGGCCAATGTCGTTTGCTTATAATGATGATCAACAGGTCGACTTTAGAGCCGTAAATTCGGGTGGGATTCATGATCTATTTGAATAGGCTTTTCTAACATGGGCTTAAAATGCACAAGCGACCAGCGCTCTTGGGCAATCATGGCTTTCTCAGGAATGAAAGTACTCTAACTCTAACAAGGTTCAACAATGTCATCTATGGTCTCAAGTGATTAACAAGCACTTTCAACACCAACTTGCTGAGGCTTGTAGGTAGGTGAGTTAGAAAATCCACCTTACGCACCAAAACTACAAGAGTCCCAGCCAGCTTTTGGGTCAATGCCATCAGTTCAAAAGGCTTGTCTAACCAACATCTAGCTAGATGTCATCTCTCACAATATTCAAATATATAATTCAAATAATTCTGTTCAATATGCATAATTAGTCAATTCAATCGTTAAATATCGTTGGATATTATGTTTATGGTCATGTATTATGAAATCAGTATTATTATTGAAAG

>Glyma09g37930.4   sequence type=transcript   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGAATAGACCACCTTAAAGAAAAAGGAGAAGGAATAATTCTAAGAGTTAACATAACTGGAACACATGTAGTAGCAGTTGACCCAAGTACAAAACCCTTCTTGTCTCGGCCTGCGGAATTACCCTTAATTTCTCTGTGTTCCTTCCAATCACATGGCATAGAATTTAAGGTTTTTTAACTAGAAGAAGATCTAATTAGCTATCTAGCTAGGAAGAAGACGAAGCAAATTAAAGACTAGTTAATTAGTGAGTCAAAAGTGGGATATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAGCTAGCAAGGCCAATGTCGTTTGCTTATAATGATGATCAACAGGTATTTAATTATGAACTCAATTAAGGTACCATAATTATTGATACATTCCATGTGCTTTGTCACAGAGTTCAGTGTGATGAACTCAATCATGTTATTATTCAGAACGCTCTGTATCGATAATATGCTTGTTACAACATTTCCCTTGATTTCTTTCTCCATATTTTTCATATTTCGAGGGAACCATTACCCCATAAAAAAATATTTTATCTGGTCTATATATGTGGAACTTTTTTTTTTGTCAATATATAGATTATGTATTATTTTTTACTTTTCAGCTAGATAAGACAGCAGAATATGTAGCGATGTCAAGGACTTTTACATTGTGTATAAGATATCTTGATCTTTACAGTACTCGTGTACTAACTGATATTATCTGAATGCATCCTCTACTTATAATTGCGTATCACGTACCAGCTATTTAATGCGAGATACAATGATACGAATCTATATATATCTCAATGTATG

>Glyma09g37930.2   sequence type=CDS   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGTGGTCGATCTCATTTGTTGGGATATTGCAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAG

>Glyma09g37930.3   sequence type=CDS   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAG

>Glyma09g37930.4   sequence type=CDS   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAG

>Glyma09g37930.2   sequence type=predicted peptide   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGERGGAPNYELQVSFTNTPQAIHELGFVQYEENQVLGFLSPSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQEVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKNKLKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPSGRSHLLGYCRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSENECFTSF*

>Glyma09g37930.3   sequence type=predicted peptide   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGERGGAPNYELQVSFTNTPQAIHELGFVQYEENQVLGFLSPSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQEVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKNKLKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSENECFTSF*

>Glyma09g37930.4   sequence type=predicted peptide   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGERGGAPNYELQVSFTNTPQAIHELGFVQYEENQVLGFLSPSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQEVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKNKLKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSENECFTSF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo