Glyma09g37930 - SoyBase

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Report for Sequence Feature Glyma09g37930

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43459281
stop:	43466618
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44745	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr2:18447482-18449004 REVERSE LENGTH=218	SoyBase	E_val: 1.00E-66	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B0LUR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR6_SOYBN	SoyBase	E_val: 2.00E-129	ISS
UniRef100_C6T2M1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2M1_SOYBN	SoyBase	E_val: 2.00E-142	ISS

Proteins Associated with Glyma09g37930

Locus	Gene Symbol	Protein Name
	WRKY121	WRKY Transcription Factor

Expression Patterns of Glyma09g37930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37930

Paralog	Evidence	Comments
Glyma18g48461	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g244000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g37930

Limit To All Plant Sequences

>Glyma09g37930.3   sequence type=transcript   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGAATAGACCACCTTAAAGAAAAAGGAGAAGGAATAATTCTAAGAGTTAACATAACTGGAACACATGTAGTAGCAGTTGACCCAAGTACAAAACCCTTCTTGTCTCGGCCTGCGGAATTACCCTTAATTTCTCTGTGTTCCTTCCAATCACATGGCATAGAATTTAAGGTTTTTTAACTAGAAGAAGATCTAATTAGCTATCTAGCTAGGAAGAAGACGAAGCAAATTAAAGACTAGTTAATTAGTGAGTCAAAAGTGGGATATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAGCTAGCAAGGCCAATGTCGTTTGCTTATAATGATGATCAACAGGTCGACTTTAGAGCCGTAAATTCGGGTGGGATTCATGATCTATTTGAATAGGCTTTTCTAACATGGGCTTAAAATGCACAAGCGACCAGCGCTCTTGGGCAATCATGGCTTTCTCAGGAATGAAAGTACTCTAACTCTAACAAGGTTCAACAATGTCATCTATGGTCTCAAGTGATTAACAAGCACTTTCAACACCAACTTGCTGAGGCTTGTAGGTAGGTGAGTTAGAAAATCCACCTTACGCACCAAAACTACAAGAGTCCCAGCCAGCTTTTGGGTCAATGCCATCAGTTCAAAAGGCTTGTCTAACCAACATCTAGCTAGATGTCATCTCTCACAATATTCAAATATATAATTCAAATAATTCTGTTCAATATGCATAATTAGTCAATTCAATCGTTAAATATCGTTGGATATTATGTTTATGGTCATGTATTATGAAATCAGTATTATTATTGAAAG

>Glyma09g37930.4   sequence type=transcript   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGAATAGACCACCTTAAAGAAAAAGGAGAAGGAATAATTCTAAGAGTTAACATAACTGGAACACATGTAGTAGCAGTTGACCCAAGTACAAAACCCTTCTTGTCTCGGCCTGCGGAATTACCCTTAATTTCTCTGTGTTCCTTCCAATCACATGGCATAGAATTTAAGGTTTTTTAACTAGAAGAAGATCTAATTAGCTATCTAGCTAGGAAGAAGACGAAGCAAATTAAAGACTAGTTAATTAGTGAGTCAAAAGTGGGATATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAGCTAGCAAGGCCAATGTCGTTTGCTTATAATGATGATCAACAGGTATTTAATTATGAACTCAATTAAGGTACCATAATTATTGATACATTCCATGTGCTTTGTCACAGAGTTCAGTGTGATGAACTCAATCATGTTATTATTCAGAACGCTCTGTATCGATAATATGCTTGTTACAACATTTCCCTTGATTTCTTTCTCCATATTTTTCATATTTCGAGGGAACCATTACCCCATAAAAAAATATTTTATCTGGTCTATATATGTGGAACTTTTTTTTTTGTCAATATATAGATTATGTATTATTTTTTACTTTTCAGCTAGATAAGACAGCAGAATATGTAGCGATGTCAAGGACTTTTACATTGTGTATAAGATATCTTGATCTTTACAGTACTCGTGTACTAACTGATATTATCTGAATGCATCCTCTACTTATAATTGCGTATCACGTACCAGCTATTTAATGCGAGATACAATGATACGAATCTATATATATCTCAATGTATG

Coding sequences of Glyma09g37930

Limit To All Plant Sequences

>Glyma09g37930.2   sequence type=CDS   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGTGGTCGATCTCATTTGTTGGGATATTGCAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAG

>Glyma09g37930.3   sequence type=CDS   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAG

>Glyma09g37930.4   sequence type=CDS   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGAGAGAGGTGGCGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAGGCCATACACGAATTGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCCCCTCTCTCAATCCTTAAAGAGTGATACCCTCGTCGTCGCTACTGCCACCACTGCAATCGCCGCTGCAGCAACCATCGGATTCGTGAGTCATAGCGAACTTGCCATCAAAACTTGGAATAACGACCAGGAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGAAGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACGCTTGGTGGAGGAGCGCAGCAACAGAAAAGAACAAGTTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCTTGCGACGATTCAAATTCATCAGAGAATGAATGCTTTACCTCTTTCTAG

Predicted protein sequences of Glyma09g37930

Limit To All Plant Sequences

>Glyma09g37930.2   sequence type=predicted peptide   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGERGGAPNYELQVSFTNTPQAIHELGFVQYEENQVLGFLSPSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQEVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKNKLKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPSGRSHLLGYCRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSENECFTSF*

>Glyma09g37930.3   sequence type=predicted peptide   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGERGGAPNYELQVSFTNTPQAIHELGFVQYEENQVLGFLSPSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQEVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKNKLKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSENECFTSF*

>Glyma09g37930.4   sequence type=predicted peptide   gene model=Glyma09g37930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGERGGAPNYELQVSFTNTPQAIHELGFVQYEENQVLGFLSPSSQSQSSPLSQSLKSDTLVVATATTAIAAAATIGFVSHSELAIKTWNNDQEVGTLDPKPVEEENCTGNGSDQGNNNAWWRSAATEKNKLKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSENECFTSF*

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