Report for Sequence Feature Glyma09g37920
Feature Type: gene_model
Chromosome: Gm09
Start: 43451238
stop: 43456632
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g37920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G44770 AT
Annotation by Michelle Graham. TAIR10: ELMO/CED-12 family protein | chr2:18457817-18459886 FORWARD LENGTH=266
SoyBase E_val: 1.00E-167 ISS
GO:0006909 GO-bp
Annotation by Michelle Graham. GO Biological Process: phagocytosis
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005856 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2998
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12771 Panther
ENGULFMENT AND CELL MOTILITY
JGI ISS
PTHR12771:SF3 Panther
ELMO1
JGI ISS
PF04727 PFAM
ELMO/CED-12 family
JGI ISS
UniRef100_B9SKK4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ELMO domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKK4_RICCO
SoyBase E_val: 3.00E-174 ISS
UniRef100_I1L636 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L636_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g37920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g37920
Paralog Evidence Comments
Glyma18g48470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g37920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g243900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g37920
Coding sequences of Glyma09g37920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g37920.1 sequence type=CDS gene model=Glyma09g37920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGATAGAGGCGGTTCCTTCGTCGCTGTGAGAAGAATTTCGCAGGGTCTTGATCGAAGCAACACGTGCCATTCAAGTTCCGCTGAGTTTGTGACAGGATCAACAGCATGGCTTGGCAGAGGTCTGTCCTGTGTCTGTGCACAGAGAAGAGAAAGTGATGCCCGACCCTCTTTTGATTTAACTCCAGCCCAGGAGGAGTGCTTGCAGAGACTACAAAGTCGCATTGATATTCCATACGATGGTTCTGTCCCTGAGCACCAGGATGCCCTAAGAGATTTATGGAATGCAGCATTTCCCGAAGAAGAACTCCATGGTTTGATTTCTGAGCAGTGGAAGGACATGGGCTGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTCATATCATTGGAGAATTTGTTGTTTTTTGCTAGGAATTTCCCGAAATCCTTTCAAGATCTTTTACGGAAGCAGGAAGGAGATCGGTCAGTGTGGGAATATCCATTTGCTGTTGCTGGTGTTAACATCACATTCATGCTTATTCAGATGCTGGATCTTGAAGCAGTCAAACCTCGGACACTGGTGGGAGCAACTTTCCTAAAATTTCTTGCAGAAAATGATTCAGCTTTTGATCTTCTCTATTGCATAACATTCAAGATGATGGATCAACAATGGCTTTCTATGCGTGCTTCATACATGGATTTTAATACAGTAATGAAATCTACACGCCGTCAGCTGGAGAAAGAGCTTCTACTTGAAGACATAATGCGGCTAGAAGATGTACCCTCATACAAACTTCTCACACGATAG
Predicted protein sequences of Glyma09g37920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g37920.1 sequence type=predicted peptide gene model=Glyma09g37920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDRGGSFVAVRRISQGLDRSNTCHSSSAEFVTGSTAWLGRGLSCVCAQRRESDARPSFDLTPAQEECLQRLQSRIDIPYDGSVPEHQDALRDLWNAAFPEEELHGLISEQWKDMGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMKSTRRQLEKELLLEDIMRLEDVPSYKLLTR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
