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Report for Sequence Feature Glyma09g37802

Feature Type:gene_model
Chromosome:Gm09
Start:43290961
stop:43296938
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g37802
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60320AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) | chr3:22292073-22295228 REVERSE LENGTH=796 SoyBaseE_val: 0ISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR21450Panther UNCHARACTERIZED JGI ISS
PF04782PFAM Protein of unknown function (DUF632) JGI ISS
PF04783PFAM Protein of unknown function (DUF630) JGI ISS
UniRef100_B9RCZ6UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9RCZ6_RICCO SoyBaseE_val: 0ISS
UniRef100_D7LRN9UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LRN9_ARALL SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g37802
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g37802 not represented in the dataset
Glyma09g37802 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37802
ParalogEvidenceComments
Glyma18g48685 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37802 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g242800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g37802
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g37802
>Glyma09g37802.1   sequence type=CDS   gene model=Glyma09g37802   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCACGGCGTCCAAGCTAGAAAACGAGGACACGGTGCGCCGCTGCAAAGAGCGCCGCCGCCTGATGAAGGAGGCGGTGTACGTGCGTCACCACCTGGCCGCCGCCCATTCCGACTACTGCCGGTCCCTCCGCCTCACCGGCTCCGCCCTCTCCACCTTCTCCACCGGCGAACCCCTCTCCGTCTCCGACCACACCCCCGCCGTCTTCCTCAACAACTCCCAACACCTCCAACACCAACACCAACACCAACACCAGCACCAACCTTCTCCTTCTCCTCCGCCGCCGAAACTCGACCCCATCCTACCCCGCCGCCGCAAACCACCGCCGCCGAAGCTCCCGCACATCCTCTCCGACTCAAGCCCCTCCTCCACCCCAAGAAGCCACGTGTCAAACTTCTTCCCCACCGCACATTCTACTTACTCCTCCACCCCTTCCCAAACCTCCTCCGTTTGGAACTGGGAAAATTTCTACCCTCCTCCACCTCCTCCCGCTTCCGGTTACTTCCCCGAAGAACAACAACAAAAATTCTCCCACACTAAAACACAAACACCTTCTCATTACTCTCACAAAACACAAACACCCTCTCATTACTCTCACAAGACACAACAACACACCAATCTCCAAATCCACGACACTGATTCTGAGAGATCTGAATACGATTACTTCGACGGAAAACTCGAAACCGAGAATGAGAATGAGAAAACTGATTCTCATTCTCATCATCTTCCGGAGGAGTATACTGAAACTGAGAGGGAAGAAGTTCAGTGTAGTGAATGGGGGGATCATTATAGTACCACGAGTTCTTCTGATGATGGTGATGATGGGGTGGAGGGGGATGTGGAGTCGCGCTCCGAGATCGGGACCCGGTCGAATTTCGGGTCGTCGGTGCGGACCGAGTCGGTGGTTGGCGGCGGTGGGGCGAAGGGGTTCGACGCGGCGTCTTCGGTGGCGGCGGAGATGAAGATGGTTGTGAGGCACAGGGACTTGAGGGAGATCGTGGAGGCTATTAAGGAGAATTTCGATAACGCGGCTTCCGCTGGGGATAAGGTTTCTGACATGCTTCAGATCAGTAAGGCGCAGCTTGATCGCAGCTTCAAGCAATTGAGAAAAACCGTGTATCACTCGAGTAGCATATTGAGCAACTTGAGCTCTAGTTGGACCTCGAAACCGCCGCTGGCGGTTAAGTACCGGCTCGACACCGGTTCGCTGGACGAACCGGGCGGTCCAAAGAGTCTCTGCTCCACTTTGGAACGCCTTTTGGCGTGGGAGAAGAAGCTCTACGAGGAGATTAAGGCTAGAGAAGGTGTGAAGATTGAACATGAAAAGAAATTGTCAGCACTGCAGACTCAGGAATACAAAGGAGAGGATGAAGCTAAGATATTCAAAACCAAGGCTTCCATAAATAGGCTGCAGTCACTAATAAGTGTTACATCTCAGGCTGTGTCTACCACCTCAACTGCCATTATTGGCCTTAGGGACTCTGATCTTGTCCCTCAGCTTGTTGATCTCATACATGGATTCATGTACATGTGGAGATCAATGCACCACTACCATGAAATTCAAAGCAATATAGTGCAGCAAGTCCGTGGTCTTGTGAACAGATCATCAAGAGGTGACTCCACTTCTGAACTCCACAGGCAGGCAACTCGGGACCTTGAATCAGCCGTTTCAGCTTGGCACAACAGTTTTTGTCGCCTTATAAAATTTCAGCGCGAATTCATCCTGTCCTTGCATGGCTGGTTCAAGCTCAGCCTTGTTCCAGTCCACAATGATAACATCAACGGCAGGGAAACCTCTGAAACATACCAATTTTTTGATGAATGGAAACTCGCACTTGACCGTGTCCCTGACACGGTTGCATCTGAAGCCATCAAGAGCTTTATCAATGTTGTCCACGTGATATCTTCCAAGCAAGTGGAAGAGCTCAAGATCAAAAAACGAACCGAGACTGCATCTAAGGAACTTGAGAAAAAGGCTTCCTCTCTGCGAAACCTAGAGAGGAAGTTCTACAGCTCATATTCTATGGTAGGCATTAGCCTTCCTGATTCTGCACCTGACAATGGACAAGTGTTGGATGCGCGTGACCCACTTGCTGAGAAAAAAATAGAACTGGCAACCTGCCAAAGGCGTGTCGAAGATGAAATGCTGAGGCATTCAAAAGCTGTGGAGGTAACAAGAGCCATGACTCTCAACAATTTGCAAACAGGCTTGCCTGGAGTGTTTCAGGCATTGACCAGTTTCTCTTCCTTGTTCGCTGAGGCCCTTGAATCAGTGTGTACCCGTTCATATGCCATCAAGTAG
Predicted protein sequences of Glyma09g37802
>Glyma09g37802.1   sequence type=predicted peptide   gene model=Glyma09g37802   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCTASKLENEDTVRRCKERRRLMKEAVYVRHHLAAAHSDYCRSLRLTGSALSTFSTGEPLSVSDHTPAVFLNNSQHLQHQHQHQHQHQPSPSPPPPKLDPILPRRRKPPPPKLPHILSDSSPSSTPRSHVSNFFPTAHSTYSSTPSQTSSVWNWENFYPPPPPPASGYFPEEQQQKFSHTKTQTPSHYSHKTQTPSHYSHKTQQHTNLQIHDTDSERSEYDYFDGKLETENENEKTDSHSHHLPEEYTETEREEVQCSEWGDHYSTTSSSDDGDDGVEGDVESRSEIGTRSNFGSSVRTESVVGGGGAKGFDAASSVAAEMKMVVRHRDLREIVEAIKENFDNAASAGDKVSDMLQISKAQLDRSFKQLRKTVYHSSSILSNLSSSWTSKPPLAVKYRLDTGSLDEPGGPKSLCSTLERLLAWEKKLYEEIKAREGVKIEHEKKLSALQTQEYKGEDEAKIFKTKASINRLQSLISVTSQAVSTTSTAIIGLRDSDLVPQLVDLIHGFMYMWRSMHHYHEIQSNIVQQVRGLVNRSSRGDSTSELHRQATRDLESAVSAWHNSFCRLIKFQREFILSLHGWFKLSLVPVHNDNINGRETSETYQFFDEWKLALDRVPDTVASEAIKSFINVVHVISSKQVEELKIKKRTETASKELEKKASSLRNLERKFYSSYSMVGISLPDSAPDNGQVLDARDPLAEKKIELATCQRRVEDEMLRHSKAVEVTRAMTLNNLQTGLPGVFQALTSFSSLFAEALESVCTRSYAIK*






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