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Report for Sequence Feature Glyma09g37794

Feature Type:gene_model
Chromosome:Gm09
Start:43270314
stop:43279213
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02100AT Annotation by Michelle Graham. TAIR10: Leucine carboxyl methyltransferase | chr1:389876-392448 FORWARD LENGTH=332 SoyBaseE_val: 4.00E-151ISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
KOG2918 KOG Carboxymethyl transferase JGI ISS
PTHR13600Panther LEUCINE CARBOXYL METHYLTRANSFERASE JGI ISS
PF04072PFAM Leucine carboxyl methyltransferase JGI ISS
UniRef100_B9RCZ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine carboxyl methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RCZ7_RICCO SoyBaseE_val: 2.00E-167ISS
UniRef100_UPI00023385F0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023385F0 related cluster n=1 Tax=unknown RepID=UPI00023385F0 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g37794 not represented in the dataset

Glyma09g37794 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g48700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g242700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g37794.1   sequence type=CDS   gene model=Glyma09g37794   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATTCACACTGCAACACTGCAGCGGTGCAAGCCACCAACGATGACGCCTCCGCCAGCAAATTGTCATGTGTGAAAAAGGGATACATGAAAGATGATTACATTCATTTATTTGTTAGACGACCTGTTAGTAGATCTCCAATAATTAATCGAGGTTACTTTGCTCGCTGGGCTGCTATTCGGAAACTTCTCTATCAGTTTCTTGATGGTGAGAAGAAGTCATATGAAGATCCCCCAATAAAGAAGCAGATATTATCACTTGGAGCTGGTTTTGACACAACATATTTTCAGTTGCAGGATGAGGGTAAAGCACCATATTTATATGTGGAAGTGGATTTTAAGGAGGTAACTAGTAAAAAGGCAGCACTGATTGAAACTTGCAGTCCATTGAGGAATAAAGTTGATGTGACAGCAGTCCTATCTAGATTGTTCAGTGCACACTATAAACTACTCCCTTCAGATTTGCGTGATGTGCAACAATTACATGCTATTATAACTCATGCTGGTTTGGATCCAAGTCTGCCAACTTTTATAATTGCAGAATGTGTTCTGATCTACTTGGATCCTGATTCAACTCGTGCAATTGTTGGTTGGGCTTCCCAAACATTTTCAACCGCAATATTTTTTCTTTATGAGCAGATCCACCCAGATGATGCTTTTGGACAACAAATGATACGGAATTTGGAGTGTCGAGGTTGTGATCTGTTGGGTATTTATGCTACACCAACTTTAGTTGCAAAGGAAAAATTGTTTCTGGACCAAGGATGGCAGAAGTCTGTTGCCTGGGACATGATGAGAGTTTATAATGATTTTATTGATGCCCAAGAAAGACAGGAGCACTACTGTGTGGCTTATGCAATCAATGATGCCATGGTATGA

>Glyma09g37794.1   sequence type=predicted peptide   gene model=Glyma09g37794   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSHCNTAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVSRSPIINRGYFARWAAIRKLLYQFLDGEKKSYEDPPIKKQILSLGAGFDTTYFQLQDEGKAPYLYVEVDFKEVTSKKAALIETCSPLRNKVDVTAVLSRLFSAHYKLLPSDLRDVQQLHAIITHAGLDPSLPTFIIAECVLIYLDPDSTRAIVGWASQTFSTAIFFLYEQIHPDDAFGQQMIRNLECRGCDLLGIYATPTLVAKEKLFLDQGWQKSVAWDMMRVYNDFIDAQERQEHYCVAYAINDAMV*







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