Glyma09g37750 - SoyBase

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Report for Sequence Feature Glyma09g37750

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43247669
stop:	43252975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67325	AT	Annotation by Michelle Graham. TAIR10: Ran BP2/NZF zinc finger-like superfamily protein \| chr1:25209825-25212412 REVERSE LENGTH=287	SoyBase	E_val: 5.00E-45	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4198	KOG	RNA-binding Ran Zn-finger protein and related proteins	JGI		ISS
PTHR23111	Panther	ZINC FINGER PROTEIN	JGI		ISS
PTHR23111:SF17	Panther	OS07G0490600 PROTEIN	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_B6T245	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zn-finger, RanBP-type, containing protein n=1 Tax=Zea mays RepID=B6T245_MAIZE	SoyBase	E_val: 3.00E-61	ISS
UniRef100_I1L622	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L622_SOYBN	SoyBase	E_val: 1.00E-178	ISS

Expression Patterns of Glyma09g37750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37750

Paralog	Evidence	Comments
Glyma18g48760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g242400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g37750

Limit To All Plant Sequences

>Glyma09g37750.2   sequence type=transcript   gene model=Glyma09g37750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGATAAAAAAAATGTCTTCGTCTCACTCGTGACTCGTCTCTGTCCCCTCTCTGACAATTTCCGAGTCCTTCTCTTTTCCGATGGCTTCTACAAAGGTGGGTTTGCTTCAATCTCCATGCAATGTTCCATATTTATCTCATTCGTACTAAAGTTTCGTTTTTTCTTTGTATTACTGTGTGGGTTTCGTGTACCCTTGCTATCAGGTCAACAATCGAGGTTCCCCTGGATCAAAAAGGTTTCGAAACGACGCCAGCCCCCATTATAAGCCCATATAGAAACAGTCATCCCTTCTACCATGGTGGTTTTGGCATTCCTCCTCCATCATATGGAATACCAAGTCAGTTTGGATCCCCAATACCTCATCCTGGCCTACAGTATGATTATGGTTTGTATGCTAGGGCTCGTGCACCATACAGTCCATTGCCCATGTTCCCACCTGCAAGCTTTGGAGGTATTAATTATGGCCCAAGGCCCAGAATTGATGGCTATGGATATGGCTTTCAAAGTCCTCCTCCTCCATGGGCTGAAGGATTAGTAGCTGATAATTTTGCATCTCGAAAACGCAGAGGAGGGCCTGATGGTTTGTCTGAAGGGGACTGGATTTGTCCAAGGTGTGACAATGTTAATTTTGCCTTTAGAACCACTTGCAACATCAAACATTGTGGAGCCGTCAAACCTAGCTCAAACAAACCAAATACAGCAGTTATCCCTGAAGGTAGTTGGACTTGTGAAAAATGCGGTAACCTCAACTATCCCTTTCGAAATGTATGCAACCGCAAAGACTGTAGAAATGAGAAAACAGTTTCTGCCTAGTGACATCTCTATATTGTAAATAGAGGCTTCATTGCATTTGTCTCCTTTTGTAAAGGAAAGTTACTCTTAAATGATAATTTTTCTATAATGATAGCCGGGACTTTTAAGGGAAAGGTTTTCCTAC

Coding sequences of Glyma09g37750

Limit To All Plant Sequences

>Glyma09g37750.1   sequence type=CDS   gene model=Glyma09g37750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTACAAAGGTCAACAATCGAGGTTCCCCTGGATCAAAAAGGTTTCGAAACGACGCTTCGCGTAAAGATGGAGATTGGACCTGTCCTAATTGTGGGAACTTAAACTTTTCTTTTAGAACTGTTTGCAACCAGGGACACTGTGGTGCCCCAAGACCATCCCTAACTATAACTCCACCAGCCCCCATTATAAGCCCATATAGAAACAGTCATCCCTTCTACCATGGTGGTTTTGGCATTCCTCCTCCATCATATGGAATACCAAGTCAGTTTGGATCCCCAATACCTCATCCTGGCCTACAGTATGATTATGGTTTGTATGCTAGGGCTCGTGCACCATACAGTCCATTGCCCATGTTCCCACCTGCAAGCTTTGGAGGTATTAATTATGGCCCAAGGCCCAGAATTGATGGCTATGGATATGGCTTTCAAAGTCCTCCTCCTCCATGGGCTGAAGGATTAGTAGCTGATAATTTTGCATCTCGAAAACGCAGAGGAGGGCCTGATGGTTTGTCTGAAGGGGACTGGATTTGTCCAAGGTGTGACAATGTTAATTTTGCCTTTAGAACCACTTGCAACATCAAACATTGTGGAGCCGTCAAACCTAGCTCAAACAAACCAAATACAGCAGTTATCCCTGAAGGTAGTTGGACTTGTGAAAAATGCGGTAACCTCAACTATCCCTTTCGAAATGTATGCAACCGCAAAGACTGTAGAAATGAGAAAACAGTTTCTGCCTAG

>Glyma09g37750.2   sequence type=CDS   gene model=Glyma09g37750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCATATTTATCTCATTCGTACTAAAGTTTCGTTTTTTCTTTGTATTACTGTGTGGGTTTCGTGTACCCTTGCTATCAGGTCAACAATCGAGGTTCCCCTGGATCAAAAAGGTTTCGAAACGACGCCAGCCCCCATTATAAGCCCATATAGAAACAGTCATCCCTTCTACCATGGTGGTTTTGGCATTCCTCCTCCATCATATGGAATACCAAGTCAGTTTGGATCCCCAATACCTCATCCTGGCCTACAGTATGATTATGGTTTGTATGCTAGGGCTCGTGCACCATACAGTCCATTGCCCATGTTCCCACCTGCAAGCTTTGGAGGTATTAATTATGGCCCAAGGCCCAGAATTGATGGCTATGGATATGGCTTTCAAAGTCCTCCTCCTCCATGGGCTGAAGGATTAGTAGCTGATAATTTTGCATCTCGAAAACGCAGAGGAGGGCCTGATGGTTTGTCTGAAGGGGACTGGATTTGTCCAAGGTGTGACAATGTTAATTTTGCCTTTAGAACCACTTGCAACATCAAACATTGTGGAGCCGTCAAACCTAGCTCAAACAAACCAAATACAGCAGTTATCCCTGAAGGTAGTTGGACTTGTGAAAAATGCGGTAACCTCAACTATCCCTTTCGAAATGTATGCAACCGCAAAGACTGTAGAAATGAGAAAACAGTTTCTGCCTAG

Predicted protein sequences of Glyma09g37750

Limit To All Plant Sequences

>Glyma09g37750.1   sequence type=predicted peptide   gene model=Glyma09g37750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTKVNNRGSPGSKRFRNDASRKDGDWTCPNCGNLNFSFRTVCNQGHCGAPRPSLTITPPAPIISPYRNSHPFYHGGFGIPPPSYGIPSQFGSPIPHPGLQYDYGLYARARAPYSPLPMFPPASFGGINYGPRPRIDGYGYGFQSPPPPWAEGLVADNFASRKRRGGPDGLSEGDWICPRCDNVNFAFRTTCNIKHCGAVKPSSNKPNTAVIPEGSWTCEKCGNLNYPFRNVCNRKDCRNEKTVSA*

>Glyma09g37750.2   sequence type=predicted peptide   gene model=Glyma09g37750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFHIYLIRTKVSFFLCITVWVSCTLAIRSTIEVPLDQKGFETTPAPIISPYRNSHPFYHGGFGIPPPSYGIPSQFGSPIPHPGLQYDYGLYARARAPYSPLPMFPPASFGGINYGPRPRIDGYGYGFQSPPPPWAEGLVADNFASRKRRGGPDGLSEGDWICPRCDNVNFAFRTTCNIKHCGAVKPSSNKPNTAVIPEGSWTCEKCGNLNYPFRNVCNRKDCRNEKTVSA*

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