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Report for Sequence Feature Glyma09g37730

Feature Type:gene_model
Chromosome:Gm09
Start:43240475
stop:43241181
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g37730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25950AT Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase G3 | chr4:13173815-13174324 REVERSE LENGTH=108 SoyBaseE_val: 4.00E-30ISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0016471GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar proton-transporting V-type ATPase complex SoyBaseN/AISS
KOG1772 KOG Vacuolar H+-ATPase V1 sector, subunit G JGI ISS
PTHR12713Panther VACUOLAR ATP SYNTHASE SUBUNIT G JGI ISS
PTHR12713:SF1Panther VACUOLAR ATP SYNTHASE SUBUNIT G JGI ISS
PF03179PFAM Vacuolar (H+)-ATPase G subunit JGI ISS
UniRef100_B9S761UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar ATP synthase subunit G plant, putative n=1 Tax=Ricinus communis RepID=B9S761_RICCO SoyBaseE_val: 4.00E-35ISS
UniRef100_UPI00023385ECUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023385EC related cluster n=1 Tax=unknown RepID=UPI00023385EC SoyBaseE_val: 7.00E-61ISS

Expression Patterns of Glyma09g37730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g37730 not represented in the dataset
Glyma09g37730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37730
ParalogEvidenceComments
Glyma18g48830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g242300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g37730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g37730
>Glyma09g37730.1   sequence type=CDS   gene model=Glyma09g37730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCTTTAAAGGACAAGGAGGCATTCAGATGCTGCTGATTGCAGAACAAGAAGCCCAACATATTGTTTCTAATGCAAAGGATGAGGCAGAGAGGGAGGCAACAGAATACAGATCTCACATTGAAGAGGAGTATCAAAAGTCAATTTCAGAGAACACTGGGAGTTCTGGATCTAATGTAAAAAGGCTTGAGGAGGAGACAAATGCTAAGATTAAAAATTTAAAGAAATCAACTTCAAAGGTCTCATCAGAAGTGGTTGACATGCTACTCAAGTATGTTACAAATATCAAAACATAA
Predicted protein sequences of Glyma09g37730
>Glyma09g37730.1   sequence type=predicted peptide   gene model=Glyma09g37730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPFKGQGGIQMLLIAEQEAQHIVSNAKDEAEREATEYRSHIEEEYQKSISENTGSSGSNVKRLEEETNAKIKNLKKSTSKVSSEVVDMLLKYVTNIKT*






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