Glyma09g37700 - SoyBase

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Report for Sequence Feature Glyma09g37700

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43211283
stop:	43216392
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05940	AT	Annotation by Michelle Graham. TAIR10: cationic amino acid transporter 9 \| chr1:1801365-1803942 REVERSE LENGTH=569	SoyBase	E_val: 0	ISS
GO:0003333	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1286	KOG	Amino acid transporters	JGI		ISS
PTHR11785	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR11785:SF131	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00324	PFAM	Amino acid permease	JGI		ISS
UniRef100_B9RD13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cationic amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9RD13_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L617	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L617_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37700

Paralog	Evidence	Comments
Glyma18g48860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g242000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37700

Limit To All Plant Sequences

>Glyma09g37700.1   sequence type=CDS   gene model=Glyma09g37700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATTGGTTCTCCTTCTTCATCTTCCTCCCGTTGTTCGCGTTTCTGGTCGTCGGCGCTCCGATCGAAGCGCCTCGTGTCGCCGGCGGAAAAGGCCGCCCGCGACAGCTCCGACCTCGGCCTCTCCCGCCGCCTCGGCGTTCTCGACCTCGTACTCCTCGGAATTGGCGCCTCCATCGGCGCCGGCATCTTCGTCGTCACCGGCACCGTCGCCCGCGACGCCGGACCTGGAGTAACAATAAGTTTTATACTTGCGGGAGCATCATGTGTTATAAATGCACTCTGTTATGCTGAACTAGCTACCCGATTTCCTGCTGTTGTTGGAGGAGCATATCTGTATGCGTACACAGCTTTTAATGAACTTACAGCTTTTCTTGTTTTTGGACAATTGATGCTTGACTATCACATTGGGGCAGCTAGTATAGCGAGAAGCCTAGCCAGTTATCTAATAAATATTCTAGAACTCTTCCCTGTTTTCAAAGATAACATTCCAAAATGGATTGGGCACGGTGAAGACATTGGAGATGTGCTATCCATCAATGTCTTGGCTCCAATTTTGCTAGTTCTTCTAACTTTTATTCTCTGTCGGGGTGTTCAAGAATCGTCTGTTGTGAATTCTCTTATGACAGTGACCAAGGTAATCATAGTTATCATCGTCATTTTTGCTGGAGCGTTTGAGGTTGACGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAAGCCATATTTACAGGAGCTACCGTAGTCTTCTTTGCATATGTTGGATTTGATGCAGTTGCAAATTCTGCCGAAGAATCCAAGAGGCCTCAGCGGGATTTGCCAATAGGCATAATAGGAAGCCTCTTAATATGTATTGCATTGTACATTGGAGTATGCCTGGTGATTACTGGAATGGTTCCATACAATCTTCTAGGAGAAGATGCTCCTTTGGCTGAAGCTTTTACGTCTAAGGGATTAAAATTTGTTTCTATCCTGATTAGTGTTGGTGCTGTTGCTGGACTTACAACAACACTCCTTGTTGGTCTCTACGTTCAGTCTCGGCTATACCTTGGGCTTGGCAGGGATGGCTTACTACCCTTAATATTTGCTAAAGTCCACCCCAAACGCCACACCCCTATTCATTCTCAGATCTGGGTTGGCTTGGTTGCCAGTGTTTTGGCTGGGCTATTTAATGTGCATGTGCTCTCTCACATTCTTTCCGTTGGTACACTGACTGGCTATTCAGTTGTCTCAGCGTGTGTCGTCGTTCTTCGCTGGAAGGACAAGACAAATAGTCAAGTGTCATCTTCTGCTGAGCGGGAAGGCGTAATTTGCCTCATTGCTGTCGCCCTTTGTGGATTTGCTAGTGGGCTCTTGTATCGTTATGATGCTTCATTTATTTTTCTGATTCTGGCTTTAGTTATTGCAGCTGGTGCTTCTGCTGCTCTTGTTTTCCGCCAGGGTTATGCAGATGCACCAGGGTTTTCTTGCCCAGGGGTTCCCCTTCTGCCAAATATTTGCATCTTTTTTAACATGTTCTTATTTGCCCAGTTACATCATGAAGCATGGGTGAGATTTGTGATTCTTTGTGTTGTCATGGTTGGTGTTTATGCAATATATGGCCAATATCATGCTAACCCCAGTGCAGAAGAGAATGTCTATCACAGGGCACCCGAGGAAGAAGCTCTATGA

Predicted protein sequences of Glyma09g37700

Limit To All Plant Sequences

>Glyma09g37700.1   sequence type=predicted peptide   gene model=Glyma09g37700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIGSPSSSSSRCSRFWSSALRSKRLVSPAEKAARDSSDLGLSRRLGVLDLVLLGIGASIGAGIFVVTGTVARDAGPGVTISFILAGASCVINALCYAELATRFPAVVGGAYLYAYTAFNELTAFLVFGQLMLDYHIGAASIARSLASYLINILELFPVFKDNIPKWIGHGEDIGDVLSINVLAPILLVLLTFILCRGVQESSVVNSLMTVTKVIIVIIVIFAGAFEVDVSNWSPFAPNGLKAIFTGATVVFFAYVGFDAVANSAEESKRPQRDLPIGIIGSLLICIALYIGVCLVITGMVPYNLLGEDAPLAEAFTSKGLKFVSILISVGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPLIFAKVHPKRHTPIHSQIWVGLVASVLAGLFNVHVLSHILSVGTLTGYSVVSACVVVLRWKDKTNSQVSSSAEREGVICLIAVALCGFASGLLYRYDASFIFLILALVIAAGASAALVFRQGYADAPGFSCPGVPLLPNICIFFNMFLFAQLHHEAWVRFVILCVVMVGVYAIYGQYHANPSAEENVYHRAPEEEAL*

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