SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G39890 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) | chr5:15974543-15976013 FORWARD LENGTH=276 | SoyBase | E_val: 1.00E-115 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0047800 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity | SoyBase | N/A | ISS |
| KOG4281 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR22966 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF07847 | PFAM | Protein of unknown function (DUF1637) | JGI | ISS | |
| UniRef100_G7KZU7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-aminoethanethiol dioxygenase n=1 Tax=Medicago truncatula RepID=G7KZU7_MEDTR | SoyBase | E_val: 1.00E-131 | ISS |
| UniRef100_I1L5Z5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5Z5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g37490 not represented in the dataset |
Glyma09g37490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g49130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g240100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g37490.2 sequence type=transcript gene model=Glyma09g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGGGGGGGGTGATCTGCATTATAGTGGGGTTATAAATGGGGATTGGGAAGAACATGTCTGAGACAAAAGGGAGGGTGTTGGGTGAATTGCGTGAAGAGACCAATACCAACAACAACAACAACAACAAATCAAGGAGGAACCGGAGACATCGTCAGAGGAAGATGTCGCCGGGTCAGAAACTGTTTCAGACGTGTAATGAAGTGTTTGCTTCTACTGGCCCTGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGGTGGAATAAAACAAGAAGACGTTGGCTTGAAGCCTGAAATGCCATTTTTCAGTTCAAACAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTATGAGTGTAAAGAATTCTCGATGGGAATATTTTGCTTGCCACCTTGTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGAACCATGCACATCAAATCTTATGATTGGGTCGTTGACTTGCCTCCTCACATGCCTACCATTGTCAAACCATCGTCAGAAACCCTGACTCCAGATATGCGATTGGCTAAAGTAAAGGTTGATGCTGATTTCAATGCTCCTTGTGACCCCTCCATCCTTTATCCTGCTGATGGGGGCAACATGCATTGGTTCACAGCAGTGACAGCTTGTGCAGTTCTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAGATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAGAGAAGGAGAAACCTGAGAATTTAAAAGTAGTTGTCAACATGTATAGCGGCCCAAAGATTGTGGAGAACTAATGTTGTCTTGTCACCTAACATCTTCCTGTTCCTATGATCTCTTGTGCGGTCAAATGATATTCCTGTGAATCATTTGTCTCATTCTATCCCATTTGATGCCACCCTTTTGTCCTCTAGTGAACCTTGGTCTATCTTTATACCTTTTTTAGTATTTTTATTTTCTTCTGCATGGAACATGAGGCACTTAATTGGTGCTGTTTTGAACCTACAGTTAGTTATTATGTTCATACAAAAAACAGCAAAAGACAAAGGTGACGGCTTACACTGGAAGATAGTATCAAACTGAAGGTGCATATTGCATAGAAATGAACTGTTTTTTTTTGTTTTTAAAGAGGTGCTCGGTTTGTAGAAGGATTTATTTAATTTAATTAGTTTGATGCAAAAAAAAAAAAACGGTGCATTTAGTGAACTGGATTGGTGTATAGCATTGATTTTAAACTGAACTACTAATTGAG
>Glyma09g37490.1 sequence type=CDS gene model=Glyma09g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGATTGGGAAGAACATGTCTGAGACAAAAGGGAGGGTGTTGGGTGAATTGCGTGAAGAGACCAATACCAACAACAACAACAACAACAAATCAAGGAGGAACCGGAGACATCGTCAGAGGAAGATGTCGCCGGGTCAGAAACTGTTTCAGACGTGTAATGAAGTGTTTGCTTCTACTGGCCCTGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGGTGGAATAAAACAAGAAGACGTTGGCTTGAAGCCTGAAATGCCATTTTTCAGTTCAAACAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTATGAGTGTAAAGAATTCTCGATGGGAATATTTTGCTTGCCACCTTGTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGAACCATGCACATCAAATCTTATGATTGGGTCGTTGACTTGCCTCCTCACATGCCTACCATTGTCAAACCATCGTCAGAAACCCTGACTCCAGATATGCGATTGGCTAAAGTAAAGGTTGATGCTGATTTCAATGCTCCTTGTGACCCCTCCATCCTTTATCCTGCTGATGGGGGCAACATGCATTGGTTCACAGCAGTGACAGCTTGTGCAGTTCTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAGTAGATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAGAGAAGGAGAAACCTGAGAATTTAAAAGTAGTTGTCAACATGTATAGCGGCCCAAAGATTGTGGAGAACTAA >Glyma09g37490.2 sequence type=CDS gene model=Glyma09g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGATTGGGAAGAACATGTCTGAGACAAAAGGGAGGGTGTTGGGTGAATTGCGTGAAGAGACCAATACCAACAACAACAACAACAACAAATCAAGGAGGAACCGGAGACATCGTCAGAGGAAGATGTCGCCGGGTCAGAAACTGTTTCAGACGTGTAATGAAGTGTTTGCTTCTACTGGCCCTGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGGTGGAATAAAACAAGAAGACGTTGGCTTGAAGCCTGAAATGCCATTTTTCAGTTCAAACAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTATGAGTGTAAAGAATTCTCGATGGGAATATTTTGCTTGCCACCTTGTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGAACCATGCACATCAAATCTTATGATTGGGTCGTTGACTTGCCTCCTCACATGCCTACCATTGTCAAACCATCGTCAGAAACCCTGACTCCAGATATGCGATTGGCTAAAGTAAAGGTTGATGCTGATTTCAATGCTCCTTGTGACCCCTCCATCCTTTATCCTGCTGATGGGGGCAACATGCATTGGTTCACAGCAGTGACAGCTTGTGCAGTTCTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGCAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAACTATTCAGATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAGAGAAGGAGAAACCTGAGAATTTAAAAGTAGTTGTCAACATGTATAGCGGCCCAAAGATTGTGGAGAACTAA
>Glyma09g37490.1 sequence type=predicted peptide gene model=Glyma09g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIGKNMSETKGRVLGELREETNTNNNNNNKSRRNRRHRQRKMSPGQKLFQTCNEVFASTGPGIVPSPQNIEMLLSVLGGIKQEDVGLKPEMPFFSSNNPRRTPKITYLHIYECKEFSMGIFCLPPCGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPHMPTIVKPSSETLTPDMRLAKVKVDADFNAPCDPSILYPADGGNMHWFTAVTACAVLDVLGPPYSDPDGRHCTYYQNFPFSNYSVDGLSIPEEERTAYEWLQEKEKPENLKVVVNMYSGPKIVEN* >Glyma09g37490.2 sequence type=predicted peptide gene model=Glyma09g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIGKNMSETKGRVLGELREETNTNNNNNNKSRRNRRHRQRKMSPGQKLFQTCNEVFASTGPGIVPSPQNIEMLLSVLGGIKQEDVGLKPEMPFFSSNNPRRTPKITYLHIYECKEFSMGIFCLPPCGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPHMPTIVKPSSETLTPDMRLAKVKVDADFNAPCDPSILYPADGGNMHWFTAVTACAVLDVLGPPYSDPDGRHCTYYQNFPFSNYSDGLSIPEEERTAYEWLQEKEKPENLKVVVNMYSGPKIVEN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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