Glyma09g37461 - SoyBase

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Report for Sequence Feature Glyma09g37461

Feature Type:	gene_model
Chromosome:	Gm09
Start:	43024622
stop:	43029118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37461

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF01011	PFAM	PQQ enzyme repeat	JGI		ISS
PF10527	PFAM	Pyrrolo-quinoline quinone coenzyme N-terminus	JGI		ISS
UniRef100_A2Q5S2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=A2Q5S2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_A2Q5S2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=A2Q5S2_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37461

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g37461 not represented in the dataset	Glyma09g37461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37461

Paralog	Evidence	Comments
Glyma18g49203	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37461 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g239900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37461

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37461

Limit To All Plant Sequences

>Glyma09g37461.1   sequence type=CDS   gene model=Glyma09g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGATTCGAGCAAATTACTTGTTTTATTATTTCCATGATTCTAATATGCCTACTAGCAAGTTCAGTATCCGAAGGTTCTGATGACATATTCACCTCTACAGAAAAGACAGAAAATTGGTTAAACCATGGTGGGAATATATACAACAGAAGATATGCCAGCATGGAGCACAAGATCAGCGTTGAAACTGTTTCGAACCTAAGTTTGAAGTGGAAGTTCTATGCTGGGAAAGACATAACTGCAACTCCAGCTATTTTCGATGGCACACTCTACTTTCCATGTTGGAATGGGGATATTTTCGCAGTAAGAGCAAAAGATGGGTCGCTGGTGTGGAAGCAGAACTTGGGGAATTTAACGGGGCTAAGTGCAACGGGGTTTGTGGCAGGTGTTAACTGGACAGTGGCTAGGGCAACACCAACAATAGCAGAGGTTGACCTTCTGATTTTTGGAATATATGGTCCTGCAGTTGTTATTGCTGTGAAAAGATCAACAGGAGACTTAGTTTGGCAGACACCTTTGGACAGCCATAACTCCAGTGTTGTCACCATGTCTGGAACTTACTACAAAGGGGCTTATTATGTTGGGGCATCTTCACTAGAAGAACTCACTACCGAAGAATGTTGCACCTTTCGGGGAAGCTTCTCAAAGCTAGATATTCAATCTGGTGTCATTTTGTGGCAAACCTTCATGCTGCCTGATAATCATGGACAAAGAGGAGAATATGCTGGAGCAGCTGTATGGGGAAGTAGCCCTTCTATTGATGCATCAAGGAATCATATATACATTGCCACTGGAAACTTGTATTCTGCCCCTTTGGACATACTTGAATGTCAAGAAAGAGAGAATAATGTAACACAACCCACTCACCCCGATGAGTGTGTTGAACCAGACAATCACTCTGATTCAATCCTTGCACTTGACTTGGACGATGGAAAAATCAAATGGTACCGCCAACTGGGAGGATATGATGTGTGGTTCCTTTCATGCAACAATTTGTCAACACCTAATTGTCCACCTGGTCCTAACCCTGATGCTGATTTTGGGGAGGCACCAATGATGCTCACAATTGATGTAAATGGAACAAAACAAGATACTGTTGTTGCTGTACAAAAGAGTGGTTTTGCTTGGGCTTTGCACCGCGACAACGGCAATCTCATCTGGTCTACGGAAGCTGGGCCTGGTGGGCTAGCAGGAGGTGGAACTTGGGGAGCAGCAACTGACAAAGAAAGGGTCTACACCAACATCGCTAATTCGGATGGCCAGAACTTCACTCTTAAACCATCCAACAAGACTACAACCAGTGGAGGGTGGGTAGCAATGGAAGCAAGTAGTGGCAAGATTTTGTGGTCCATAGCCAACCCTAGTAATGCCACTGCTAATGGTCCTGTTACTGTAGCTAACGGCGTTGTCTTTGCAGGATCCACAAATCAAAAAGGGCCTATTTACGCAATTAACGGCAAGACTGGTAAAATTGAATGGTCTTATGAGACTGGATCGACAGTGTATGGTGGCATGTCAGTCAGTGATGGGTGTATATATTTTGGAAATGGATATAAGATAGGTGTTGGATTAAACCTTGGAAATTTCACTGCTGGAACTTCGCTTTTTGCTTTTTGTGTCTAA

Predicted protein sequences of Glyma09g37461

Limit To All Plant Sequences

>Glyma09g37461.1   sequence type=predicted peptide   gene model=Glyma09g37461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARFEQITCFIISMILICLLASSVSEGSDDIFTSTEKTENWLNHGGNIYNRRYASMEHKISVETVSNLSLKWKFYAGKDITATPAIFDGTLYFPCWNGDIFAVRAKDGSLVWKQNLGNLTGLSATGFVAGVNWTVARATPTIAEVDLLIFGIYGPAVVIAVKRSTGDLVWQTPLDSHNSSVVTMSGTYYKGAYYVGASSLEELTTEECCTFRGSFSKLDIQSGVILWQTFMLPDNHGQRGEYAGAAVWGSSPSIDASRNHIYIATGNLYSAPLDILECQERENNVTQPTHPDECVEPDNHSDSILALDLDDGKIKWYRQLGGYDVWFLSCNNLSTPNCPPGPNPDADFGEAPMMLTIDVNGTKQDTVVAVQKSGFAWALHRDNGNLIWSTEAGPGGLAGGGTWGAATDKERVYTNIANSDGQNFTLKPSNKTTTSGGWVAMEASSGKILWSIANPSNATANGPVTVANGVVFAGSTNQKGPIYAINGKTGKIEWSYETGSTVYGGMSVSDGCIYFGNGYKIGVGLNLGNFTAGTSLFAFCV*

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