Glyma09g37400 - SoyBase

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Report for Sequence Feature Glyma09g37400

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42977614
stop:	42980092
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39865	AT	Annotation by Michelle Graham. TAIR10: Glutaredoxin family protein \| chr5:15965560-15966732 REVERSE LENGTH=390	SoyBase	E_val: 4.00E-124	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG2824	KOG	Glutaredoxin-related protein	JGI		ISS
PTHR10168	Panther	GLUTAREDOXIN	JGI		ISS
PTHR10168:SF44	Panther	GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTE	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_Q2HVR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin fold n=1 Tax=Medicago truncatula RepID=Q2HVR5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023385E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023385E1 related cluster n=1 Tax=unknown RepID=UPI00023385E1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37400

Paralog	Evidence	Comments
Glyma18g49301	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g239300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37400

Limit To All Plant Sequences

>Glyma09g37400.1   sequence type=CDS   gene model=Glyma09g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTGCAAGTTCAAAGCAAAAGAAATGTCGGCGATGCAATGCTCCTTATTCTCCTGCTCCTAGAAGCTATTCAATGCACGTTCATCACCCACCTCTAGCAGAAGGTGATAGCTACCACGTTGTGGCACTCACTTCCACAACATTGGGCACTCTCAAACTCAATTCCCCTGCTCCAACTCAAAATTTTTCTGGGAATTGTAACCATGATTTCAAGCTTTCCAATGGCAAGCTTGGAAACGCTGAAAGTTTCAGGTTTGATAGTGAAAGCTTTGTGCAAAGGCTTGAGGAGGAGAAGGAGAAGAAGAGTGAGGTATTGGAGAAAGACAAAAAAGAAGAGTTCTCAATGGGTTTAATTGAGGCCAAGACTTGGTCCAACATGATTGAGCAAAAGTTGCCAAAAGTTTTTCCCAAGACCCCAATTAGAACACCACCTGGTGAGCCTGAGACAATCAACACATGGGAACTCATGGAAGGCCTTGAAGACACCACGCCTTTCCGGTCGCCGATCCACTTCCGGAGCTTCTCCTTTGATTTCAATGGTGGTGATGATGTTGGTGACGGTGATCTTGATGTTGATGTTGATCCACCCAAGATGAGTGTTGTTGCTTCTCCAAAACCCATGTGGCTTCTCATGACTGAGGAGGAGTCAAGACTCAACCCTGCAATCTCAGATTTTGATCCTGAAGTGATTTCCGCATTCAGGAAGTCCTTGCAACAGCTCTCTCCGGATAGCCCCTTCCACCTTCGACCGGAGCCGGGTGACCAAGACAAGCAAGGGACTAAAAAGGGGTCCTCATTTGAGGAAAATGACTTTGTTGTGGATGATGTCAAGGTTGATGATCCATGTGGGAAGGACAAGTTGCTGTTGTACTTCACTAGCTTACGCGGTGTGCGAAAGACTTACGAGGATTGCTGCCAAGTGAGGATGATTCTGAAGGGATTGGGAATAAGAGTGGATGAGAGGGATGTGTCAATGCATTCAGGGTTCAAGGAAGAGCTTAAAGAGCTATTGGGTGATGGCCATGGTGGTTTAGGATTGCCAAGGGTGTTTCTTGGGGGGAATTACATTGGTGGGGCTGAGGAAATTCAGAGGCTGCATGAGGATGGGAAGCTTGAGAAGCTTTTGGGTTGCTGTGAGAAGATTGAGGACAGTGTTGGAGGTGATGGAGTAGGGGGAGTGTGTGAGGCTTGTGGGGATATAAGGTTTGTTCCTTGTGAAACCTGTTGTGGAAGCTGTAAAATTTACTACGAAGGTGATGAAGATGAAAATGAAGAAGAATATGTTGACGGTGAAGTAGGGGAGTGTGGATTCCAGCGTTGCCCTGATTGCAATGAAAATGGACTAATTCGTTGCCCCATGTGTTGCTGTTAG

Predicted protein sequences of Glyma09g37400

Limit To All Plant Sequences

>Glyma09g37400.1   sequence type=predicted peptide   gene model=Glyma09g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCASSKQKKCRRCNAPYSPAPRSYSMHVHHPPLAEGDSYHVVALTSTTLGTLKLNSPAPTQNFSGNCNHDFKLSNGKLGNAESFRFDSESFVQRLEEEKEKKSEVLEKDKKEEFSMGLIEAKTWSNMIEQKLPKVFPKTPIRTPPGEPETINTWELMEGLEDTTPFRSPIHFRSFSFDFNGGDDVGDGDLDVDVDPPKMSVVASPKPMWLLMTEEESRLNPAISDFDPEVISAFRKSLQQLSPDSPFHLRPEPGDQDKQGTKKGSSFEENDFVVDDVKVDDPCGKDKLLLYFTSLRGVRKTYEDCCQVRMILKGLGIRVDERDVSMHSGFKEELKELLGDGHGGLGLPRVFLGGNYIGGAEEIQRLHEDGKLEKLLGCCEKIEDSVGGDGVGGVCEACGDIRFVPCETCCGSCKIYYEGDEDENEEEYVDGEVGECGFQRCPDCNENGLIRCPMCCC*

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