Glyma09g37380 - SoyBase

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Report for Sequence Feature Glyma09g37380

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42969342
stop:	42973830
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01210	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:72182-73159 FORWARD LENGTH=249	SoyBase	E_val: 3.00E-75	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF1	Panther	DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7KZY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein vip1 n=1 Tax=Medicago truncatula RepID=G7KZY3_MEDTR	SoyBase	E_val: 3.00E-136	ISS
UniRef100_I1L5Y7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5Y7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37380

Paralog	Evidence	Comments
Glyma18g49310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g239200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g37380

Limit To All Plant Sequences

>Glyma09g37380.2   sequence type=transcript   gene model=Glyma09g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAGATTCCATTTTACCATTTTCCATCGCTCCAATCACAAAATGAAACAATTCCACTTTGGATTTATTATCTGCTGACTCATATTCTCTCTCTCTGTCTCTCTCTCCAAACTAAACTAAACTTTCCTCTGCTTCAGTTTGCCGACAAGAACCGTCAGGTAAAGCACTTCCCCAGTTTTGATCTTGTAACACTTTTTCGGGTACTCTCTTTATAGTTTTCTTCAAATACTTTTGTTTTCCCACATTGATATTGTTCTTTTTTTTAATTGTTTTGTTTGATTTTTTTTGTTCTGTCTCTCTCTTGTGGATCATTAAAATTGTTTTTTTAAATGATTTTTATTGATGCTATCAATTTTGCTGAAGGGTGATCCTTCATATTCAAATTCCAAACCCAGTTAGAGATTTTAGAATTTGATTGAGTTGGATTCGTTTCCATTGGTTGTTGGAGTGTGAAAAAAATTCTGTCTTCAGTTAATGGGCACTCTTCATTCTCAAATGTGATAAATACGATTTCCTTGCATGTCAAGTGTTGATATGTGTGCTAAAATATTAAATAAGACGATTGAAATATATAGTCATGTGATTCATGACATAGTTCTTTGTCCTAAAATTGAGGCTGATATCTGTTGGGGACCACATAATATTTTGGATTTACAATCTCTCGTGGATGAAGTGAATGCAACTAAATGATAGATAATGTTTTCTATAATTTCACTGTAGTTCTGCTTATCTTCATTGTTTGTTTTTAACAATGCATGCCCTTATTAATGGAGAAATGAAAGGGAAAGGCAAGCCTATTCCCACCATCAGTTTCTGAAGTTACATCAATCATCCTTAATTCTTTCAGGGTCACTCTTCCTCTAAAAAAGTTGTCAAGTTTTTTACTTGCTTTGCTTTCTGCAGGTTTGTTGAATCTGCTTCTTTTTATTTCAATTTGGGATTGACTCATATGACAAGTATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGCGCAATTTTTTCACATACTGTGGTTTGATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGCCTACTGCATATGTGACTTACCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCAATGATATTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGCAATCATGCATCAAATCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGCTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTATTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTCGATGAATCTCATAGTGTATCATCTACAGCAGCAACCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGGATTGAAACTTTTAAGTCTGTGGATGAGAAATATCATGTCACAGATTTCACCAAATCAGCTGCAACAGTGACAGGAACAACAGCTATAGTCGTTGCATCAGTTACCGGAAAAGCTGCTGTGGCGGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCGGATGTGTTGACACGTGCAGCGAAAGCGGCTGCCGATTTGGGTCAGAATGAAAAGAAATGAAACTCCAAACATAAACTGCTGTCTAATATGTTAACTTGTTGAACACAAACAAATACCAGCATTTGTTTGTTGCTATTGTATTATAAGACACGAACTTGCTTTACATGTGTGGCTACTCATCTGGTGCAAATGTTCATATCAGTAGTTTTGGAGAATCCATGGTAAGCAGCCACTTATTTGTGTACCCTTTTAGAAAATATAGCATATGGTACAATGTAAGTACCAAGGTTCTTCTTGTCTACTTTCATATTCAATGTGCCTAAAATATATTAAGTTCATATTTGGGATGGATTAATTTTGGGGGAAATAGTATTTTTTTCTCAAAAGCTCTCTTAAGTAGCTGGTGGAGAACTCTTTTTAGGAGATCTAGTGTCCAATGATTACTTGAGTAGTCGCGACCAGATAAAACTAGTTGTAGTTTAAGCCTGCACAGTGATTATCAGGATGGACTTCTGTTAGTAGTTCGAACATGTCGTTGGCGTTTTGCTCAGTAGTAGTAGGGGTGTCTTCCCATTCTACCATATTTGTAATATAAGGAAGAAAAGAACTCTCTTAAGATGTTAATCAGAAAAGGAAAAGT

Coding sequences of Glyma09g37380

Limit To All Plant Sequences

>Glyma09g37380.1   sequence type=CDS   gene model=Glyma09g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGTATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGCGCAATTTTTTCACATACTGTGGTTTGATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGCCTACTGCATATGTGACTTACCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCAATGATATTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGCAATCATGCATCAAATCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGCTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTATTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTCGATGAATCTCATAGTGTATCATCTACAGCAGCAACCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGGATTGAAACTTTTAAGTCTGTGGATGAGAAATATCATGTCACAGATTTCACCAAATCAGCTGCAACAGTGACAGGAACAACAGCTATAGTCGTTGCATCAGTTACCGGAAAAGCTGCTGTGGCGGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCGGATGTGTTGACACGTGCAGCGAAAGCGGCTGCCGATTTGGGTCAGAATGAAAAGAAATGA

>Glyma09g37380.2   sequence type=CDS   gene model=Glyma09g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGTATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGCGCAATTTTTTCACATACTGTGGTTTGATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGCCTACTGCATATGTGACTTACCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCAATGATATTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGCAATCATGCATCAAATCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGCTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTATTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTCGATGAATCTCATAGTGTATCATCTACAGCAGCAACCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGGATTGAAACTTTTAAGTCTGTGGATGAGAAATATCATGTCACAGATTTCACCAAATCAGCTGCAACAGTGACAGGAACAACAGCTATAGTCGTTGCATCAGTTACCGGAAAAGCTGCTGTGGCGGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCGGATGTGTTGACACGTGCAGCGAAAGCGGCTGCCGATTTGGGTCAGAATGAAAAGAAATGA

Predicted protein sequences of Glyma09g37380

Limit To All Plant Sequences

>Glyma09g37380.1   sequence type=predicted peptide   gene model=Glyma09g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSMYSGGYTALVTNLSPRATEDDVRNFFTYCGLIEHIEILRSGENAPTAYVTYRDAYALETALLLNGSMILDQCIFISRYEAYVNDYDNWSNHASNPEYSITTSQDVHMDKFVASPGEALTMAQVVVKTMVAKGYVLGKDAFVMAKAFDESHSVSSTAATKVAELSNKIGLTDTINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGTAIANSSYFAKGALWVSDVLTRAAKAAADLGQNEKK*

>Glyma09g37380.2   sequence type=predicted peptide   gene model=Glyma09g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSMYSGGYTALVTNLSPRATEDDVRNFFTYCGLIEHIEILRSGENAPTAYVTYRDAYALETALLLNGSMILDQCIFISRYEAYVNDYDNWSNHASNPEYSITTSQDVHMDKFVASPGEALTMAQVVVKTMVAKGYVLGKDAFVMAKAFDESHSVSSTAATKVAELSNKIGLTDTINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGTAIANSSYFAKGALWVSDVLTRAAKAAADLGQNEKK*

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