Glyma09g37300 - SoyBase

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Report for Sequence Feature Glyma09g37300

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42875925
stop:	42876924
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28920	AT	Annotation by Michelle Graham. TAIR10: homeobox protein 34 \| chr3:10940598-10941536 REVERSE LENGTH=312	SoyBase	E_val: 8.00E-58	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF04770	PFAM	ZF-HD protein dimerisation region	JGI		ISS
UniRef100_A2Q1B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-like n=1 Tax=Medicago truncatula RepID=A2Q1B8_MEDTR	SoyBase	E_val: 1.00E-72	ISS
UniRef100_I1L5Y0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5Y0_SOYBN	SoyBase	E_val: 4.00E-113	ISS

Expression Patterns of Glyma09g37300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37300

Paralog	Evidence	Comments
Glyma18g49390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g238400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37300

Limit To All Plant Sequences

>Glyma09g37300.2   sequence type=CDS   gene model=Glyma09g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAACCCCAACAACAACGATCAACAACAACAACACTACTCCCAGTGCAACAACAAAATCCCCAGAAAATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTCATCTTTCTCGAATGGTGTCCTCAAACGCACCCACCACCACCACCACCTCCACCACCCTATCCCTCCGGTGGTTACCTACAAAGAATGCCTCAAAAATCACGCCGCCCCACTTGGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGAGCCCCCCATCGCCTCCACCACCACGCACGTCATCGAGTATCAGCCCCACCACCGCCACCACCCTCCCCCGCCGCTGCACGCGGCGGCGGTAGCCACCCGCAGCCCCAATTCTGCTTCCCCACCGCCGATCTCCTCGTCGTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGACTGGCGGCTCCGCCGGAGAGCACCGCCGCGCCTGCCGCCGCGCCCACGAGAAAGCGGTTCCGCACGAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCACAAGTTCGCGGAGAAAGTAGGGTGGAAGATTCAGAAGCGCGACGAGGATTTGATTCACGAAATTTGCAACGAAGTTGGCGTTGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTTGCCAAAAAGGATAACAATAATATTGTTACTAGTAATGATATTAATATTACTACTAAAAATAATATTTCTACTGATAATGATGCAAATGGGAGTGATGTCAAGGTTTTTGAAAACCCTAACAATGATGGTGGTGAAGATCGCGCTGAAGATCCGAGTAGTAATCACTATGATGGGGTGAACGTTGTTGGTGCTAATGGATCTTCTAGTTCTTGA

Predicted protein sequences of Glyma09g37300

Limit To All Plant Sequences

>Glyma09g37300.2   sequence type=predicted peptide   gene model=Glyma09g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDITPTTTINNNNTTPSATTKSPENETETPTRITTPITPTTTKTSSFSNGVLKRTHHHHHLHHPIPPVVTYKECLKNHAAPLGSIKCAACGCHRNFHRREPEEPPIASTTTHVIEYQPHHRHHPPPPLHAAAVATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPAAAPTRKRFRTKFSQEQKEKMHKFAEKVGWKIQKRDEDLIHEICNEVGVDRSVLKVWMHNNKNTFAKKDNNNIVTSNDINITTKNNISTDNDANGSDVKVFENPNNDGGEDRAEDPSSNHYDGVNVVGANGSSSS*

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