Glyma09g37270 - SoyBase

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Report for Sequence Feature Glyma09g37270

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42769552
stop:	42772088
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28960	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr3:10984245-10985767 REVERSE LENGTH=405	SoyBase	E_val: 3.00E-173	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_I1L5X6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5X6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HUT2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid/polyamine transporter II n=1 Tax=Medicago truncatula RepID=Q2HUT2_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37270

Paralog	Evidence	Comments
Glyma18g49420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g238100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37270

Limit To All Plant Sequences

>Glyma09g37270.1   sequence type=CDS   gene model=Glyma09g37270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAAAAACTTTCCAACAATCCATCCTTGAACGTGCCTTTACTATCCGAGTGGAATCACCATGATGAGGAGAAAGCCATAGCCTCTCATCCTTCTACCAAAAATACTGTGTCCTTCTTTCGCACATGCCTTAATGGACTCAATGCAATATCAGGTGTTGGAATACTGTCAGTTCCATATGCTCTTGCATCTGGAGGGTGGTTAAGCTTGGTTCTTCTATTTGCTATTGCCGCTGCAGCATTTTACACAGGCACGTTGATTAAAAGATGTATGGACAAGAATTCGAACATTAAAACCTACCCAGATATAGGTGAGCTTGCATTTGGAAAGATAGGAAGGCTAATAATATCAGTGTCCATGTACACGGAGCTCTACTTGGTTTCAATAGGGTTCTTGATTCTGGAAGGCGATAACTTGAATAACTTGTGCCCCATTGAAGAGGTTCAGATAGCTGGCTTCGTAATTGGTGGGAAGCAACTGTTTGTGATATTGGTTGCCCTTATCATCTTGCCCACAGTTTGGTTGGACAACTTGAGTATGCTTTCTTATGTATCTGCAAGTGGAGTGTTTGCTTCTGCTGTAATCATCCTATCAATATCATGGACTGGAACATTTGATGGAGTTGGTTTTCATCAAAAGGGAACTCTTGTTAATTGGCGCGGAATCCCCACAGCTGTTAGCTTGTATGCCTTTTGCTATTGTGCACATCCCGTCTTCCCCACCTTGTACAATTCCATGACTAACAAACATCAGTTCTCTAATGTCCTATTAGTATGCTTTCTGTTAACCACTGTGGGTTATGCATCCATGGCTATAATTGGTTATCTAATGTTTGGTGCTGACGTTGAATCACAAGTAACATTAAACCTGCCACTGAACAAAGTAAGCTCAAAATTAGCAATATATACAACCTTGGTCAATCCCATATCCAAGTTCGCTTTGATGGCAACACCAATTACCAATGCGTTGAAAGATTTACTTCCAAGGGCGTACAAGAATAGAGCGACCAACATCTTAGTCAGCACTGTCTTGGTAATAAGCGCTACCATTGTTGCCCTCAGTGTTCCTTTCTTTGGGGATCTCATGTCTCTGGTTGGAGCGTTTTTAAGTGTCACAGCTTCTATTCTGCTTCCATGCTTGTGTTACTTGAAGATTTCAGGCACTTACAATGAATTTGGGTGTGAGACCATAGCCATAGTGACAATAATAGTAGCAGCTATAGCAATGGGAATATCTGGAACATATACCTCTGTCATGGAAATAGTACATCATTTGTAA

Predicted protein sequences of Glyma09g37270

Limit To All Plant Sequences

>Glyma09g37270.1   sequence type=predicted peptide   gene model=Glyma09g37270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEKLSNNPSLNVPLLSEWNHHDEEKAIASHPSTKNTVSFFRTCLNGLNAISGVGILSVPYALASGGWLSLVLLFAIAAAAFYTGTLIKRCMDKNSNIKTYPDIGELAFGKIGRLIISVSMYTELYLVSIGFLILEGDNLNNLCPIEEVQIAGFVIGGKQLFVILVALIILPTVWLDNLSMLSYVSASGVFASAVIILSISWTGTFDGVGFHQKGTLVNWRGIPTAVSLYAFCYCAHPVFPTLYNSMTNKHQFSNVLLVCFLLTTVGYASMAIIGYLMFGADVESQVTLNLPLNKVSSKLAIYTTLVNPISKFALMATPITNALKDLLPRAYKNRATNILVSTVLVISATIVALSVPFFGDLMSLVGAFLSVTASILLPCLCYLKISGTYNEFGCETIAIVTIIVAAIAMGISGTYTSVMEIVHHL*

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