Glyma09g37250 - SoyBase

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Report for Sequence Feature Glyma09g37250

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42755511
stop:	42759198
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15250	AT	Annotation by Michelle Graham. TAIR10: FTSH protease 6 \| chr5:4950411-4952777 REVERSE LENGTH=688	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR23076	Panther	METALLOPROTEASE M41 FTSH	JGI		ISS
PTHR23076:SF34	Panther		JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF01434	PFAM	Peptidase family M41	JGI		ISS
UniRef100_I1L5X4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent zinc metalloprotease FtsH 11 n=1 Tax=Glycine max RepID=I1L5X4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1L5X4	UniRef	Annotation by Michelle Graham. Best UniRef hit: ATP-dependent zinc metalloprotease FtsH 11 n=1 Tax=Glycine max RepID=I1L5X4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g37250 not represented in the dataset	Glyma09g37250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g37250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g237900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37250

Limit To All Plant Sequences

>Glyma09g37250.2   sequence type=CDS   gene model=Glyma09g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCAAACACAGGAGTTACATTTGAGGATGTTGCTGGAGTTGACGAAGCCAAGCAAGACTTGCAAGAGATTGTTGAGTTCTTGAAGACCCCAGAGAAGTTTTCTGCAGTTGGAGCTAAAATTCCCAAAGGGGTACTTTTGGTAGGGCCCCCAGGGACTGGAAAGACATTGCTGGCCAGGGCAATTGCAGGAGAGGCTGGGGTTCCTTTCTTTTCCCTATCTGGATCAGAGTTCATTGAGATGTTTGGGGGTGTAGGGGCCTCAAGGGTGAGAGATTTGTTTAGCAAGGCCAAGCAAAATTCACCTTGTTTGATATTCATTGATGAGATAGATGCTGTAGGGAGGCAGAGAGGTACAGGTATAGGTGGAGGAAATGATGAAAGGGAGCAAACACTGAATCAGTTGCTCACTGAAATGGATGGTTTCACTGGAAACACTGGAGTTATAGTCATTGCTGCTACCAACAGACCTGAAATTCTTGATTCAGCATTGCTTAGACCTGGGAGGTTTGATAGACAGGTCACTGTTGGATTACCAGATGAAAGAGGGAGGGAAGAAATATTGAAAGTTCATAGTAACAACAAGAAGCTTGACAAGGATGTCTCTCTTAGTGTCATTGCCATGAGAACTCCGGGATTCAGTGGTGCAGACCTCGCAAACCTCATGAATGAGGCCGCCATTCTTGCTGGTCGAAGGGGCAAAGATAAGATCACAATGAAAGAAGTTGATGACTCCATAGATCGCATTGTGGCAGGCATGGAAGGAACCAAGATGACTGATGGCAAAAGCAAAATTCTGGTGGCTTACCATGAAATTGGACATGCTGTTTGTGCGACACTGACCCCAGGGCATGATCCAGTACAGAAAGTCACTCTAGTTCCGAGAGGCCAAGCCCGGGGCTTAACATGGTTCATACCAGGTGAAGATCCATCTCTCATCTCTAAGAAGCAACTATTTGCTAGAATAGTTGGAGGCTTAGGGGGAAGAGCAGCAGAGGAAGTTATATTTGGTGAAACTGAGATAACCACTGGAGCTGCTGGGGAGTTGCAACAAATTACACAAATAGCAAGAAAGATGGTAACAGTGTTTGGCATGTCAGAGATTGGAGCGTGGGCATTGACTGATCCTGCAGTGCAAAGTAGTGATGTTGTGCTAAGGATGCTGGCTAGGAACTCAATGTCAGACAAACTAGCTGAGGACATTGATAACTCAAATCACATAAGGAATAACCGTGATGCAGTTGATAAATTAGTGGATGTGCTACTTGAGAAGGAGACCCTTAGTGGAGATAAATTAAGAGCTATCTTGTCTGAATTCACTGACATTTCTTCAATTAAGGTAGAGAGAATCCCTATTCGGGAATTGATCGAAGCATAA

Predicted protein sequences of Glyma09g37250

Limit To All Plant Sequences

>Glyma09g37250.2   sequence type=predicted peptide   gene model=Glyma09g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPNTGVTFEDVAGVDEAKQDLQEIVEFLKTPEKFSAVGAKIPKGVLLVGPPGTGKTLLARAIAGEAGVPFFSLSGSEFIEMFGGVGASRVRDLFSKAKQNSPCLIFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNTGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDERGREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITMKEVDDSIDRIVAGMEGTKMTDGKSKILVAYHEIGHAVCATLTPGHDPVQKVTLVPRGQARGLTWFIPGEDPSLISKKQLFARIVGGLGGRAAEEVIFGETEITTGAAGELQQITQIARKMVTVFGMSEIGAWALTDPAVQSSDVVLRMLARNSMSDKLAEDIDNSNHIRNNRDAVDKLVDVLLEKETLSGDKLRAILSEFTDISSIKVERIPIRELIEA*

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