Report for Sequence Feature Glyma09g37200
Feature Type: gene_model
Chromosome: Gm09
Start: 42718832
stop: 42724796
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g37200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28970 AT
Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF298) | chr3:10987970-10989782 REVERSE LENGTH=295
SoyBase E_val: 7.00E-98 ISS
GO:0009734 GO-bp
Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR12281 Panther
RP42 RELATED
JGI ISS
PF03556 PFAM
Domain of unknown function (DUF298)
JGI ISS
UniRef100_G7L1Z9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DCN1-like protein n=1 Tax=Medicago truncatula RepID=G7L1Z9_MEDTR
SoyBase E_val: 8.00E-172 ISS
UniRef100_I1L5W9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L5W9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g37200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g37200
Paralog Evidence Comments
Glyma18g49490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g37200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g237300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g37200
Coding sequences of Glyma09g37200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g37200.1 sequence type=CDS gene model=Glyma09g37200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGTTTCTCTCTCTCTCTCTCTCCTCTGCTCGCTGCTTGCTCGAAGAGCTTTGGAGGGCAAAGTTTCACCATGGATGCATCTCGGATCGACATCTTTGAGATTTACCGAAGATACTGTGACATAAAATCAGGACATGCATATATTGGTGGGGAAGAAGGGTACAGGCAAGATAGTGACATTCAGAAGGCTAAGGTCTCAAGGGAGGCACTCACACAGCTCTCAAAATTGGTTGAGTCTCGAGTTACTACAGGGGTAACAATTTTTGATGAACTTTCAATGCTCATGTCACGGTTGAATTTAAGGGCGGACTTTCCAGAATTCTCGCGGTTCTATGATTTTGTTTTCTTCATGTGTCGCGAAAATGGTCAAAAGAATATTACTGTAAGCAGGGCAGTAACTGCATGGAAATTAGTTCTTGCTGGGAGGTTTTCACTGCTTCATCCATGGTGTGACTTTGTTGAGAAGAATCAACGGTACAACATCTCTGAGGATACCTGGCAACAGGTTCTAGCTTTCAGCTGGTGTACCCGTGATAGTCTGGAAGCATATGATCCTGAAGGTGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATATGTACAGGATGCAAGGATCGTATTATGATAATTCCAACTTCCATTGTAACTGTGGTGATCCAGAATCTCAGTCATGTGTTTTTGATGACCCCCTCCCTGGACTGAGAAGTTTTTCTGGTCTAAAGAGGAAGTTACCCGAGGACTTGAGCAAAAGTGATGATATGGATTCCAATGACATGATTCTTTCAAATTGTAAAAGAAGTAGAGCTCATGATGCGGTGGATTTGGAGGACAATCCACCAGGGAATACAGCAGATGACTGTATGGAAACCAGTAGACAAAATAGTCCGTTGTGTTCATCGATGTCCCCATGTGCAGTTGAAGGTTGTCTGTCTAAGGGATTTGCAGGACTACTCTCAACTCGTTCCTTTGTGCAGTTTGGTAGGGAGAGAAGGGCTTCCTTTTGA
Predicted protein sequences of Glyma09g37200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g37200.1 sequence type=predicted peptide gene model=Glyma09g37200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRFSLSLSPLLAACSKSFGGQSFTMDASRIDIFEIYRRYCDIKSGHAYIGGEEGYRQDSDIQKAKVSREALTQLSKLVESRVTTGVTIFDELSMLMSRLNLRADFPEFSRFYDFVFFMCRENGQKNITVSRAVTAWKLVLAGRFSLLHPWCDFVEKNQRYNISEDTWQQVLAFSWCTRDSLEAYDPEGAWPVLIDDFVEHMYRMQGSYYDNSNFHCNCGDPESQSCVFDDPLPGLRSFSGLKRKLPEDLSKSDDMDSNDMILSNCKRSRAHDAVDLEDNPPGNTADDCMETSRQNSPLCSSMSPCAVEGCLSKGFAGLLSTRSFVQFGRERRASF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
