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Report for Sequence Feature Glyma09g37180

Feature Type:gene_model
Chromosome:Gm09
Start:42711854
stop:42714521
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g37180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01170AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L34e superfamily protein | chr3:58043-58690 FORWARD LENGTH=215 SoyBaseE_val: 2.00E-70ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR10759Panther 60S RIBOSOMAL PROTEIN L34 JGI ISS
PTHR10759:SF2Panther STRUCTURAL CONSTITUENT OF RIBOSOME JGI ISS
UniRef100_B9T0T4UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L34, putative n=1 Tax=Ricinus communis RepID=B9T0T4_RICCO SoyBaseE_val: 5.00E-82ISS
UniRef100_I1L5W7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5W7_SOYBN SoyBaseE_val: 1.00E-156ISS

Expression Patterns of Glyma09g37180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37180
ParalogEvidenceComments
Glyma18g49510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g237100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g37180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g37180
>Glyma09g37180.1   sequence type=CDS   gene model=Glyma09g37180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTATTTCCATAGCTCAGTCTCCCTCTGCAACTCCTCCGTTGACCAATCCATGGCAAATTCCCTCGATCCGAAATCGAGGCACAGGAAAACCCCCAATTTCCTCCCGTCTCCACCGTGCCAGCGATCCCGGTCGGCTGTGGTTGACGTCGTGATTTTTGCAGCGGTTATCGCGGCTTTTGGGTTCTTGTTGTTCCCCTATGCTCAAATTGTGGCCAGTGAGAGTGTCAAAATTGGTGTTGTGATTGTGAATTTGGTCGAAGAGGAGGCTTCTGTTGCCCCTTGGATTTACATGTTTATTGGTGTCAGTGTTACCTTTGCAGCATTGACTACTTGGGTTCTCGTGGCTTGCACAACAAGGAAGTGTGGGAACCCCAATTGCAAGGGTCTAAGGAAGGCTGCAGAGTTTGACATTCAGTTGGAGACTGAGGATTGTGTGAAGAATTCACCTTCATTGACAAAGGGTGGTGGGGTTAAGAAGGGACTGTTCAAGGTTCCTTGTGATCATCACCGCGAACTTGAGGCTGAGCTTAAGAAGATGGCACCCCCCAATGGAAGGGCCATTCTTGTCCTCAGGGGAAGGTGTGGTTGTTCTGTTGGTAGGCTGGAGGTTCCGAGACCAAAGAAGAATAGAAAGATCAAGAAGTAG
Predicted protein sequences of Glyma09g37180
>Glyma09g37180.1   sequence type=predicted peptide   gene model=Glyma09g37180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYFHSSVSLCNSSVDQSMANSLDPKSRHRKTPNFLPSPPCQRSRSAVVDVVIFAAVIAAFGFLLFPYAQIVASESVKIGVVIVNLVEEEASVAPWIYMFIGVSVTFAALTTWVLVACTTRKCGNPNCKGLRKAAEFDIQLETEDCVKNSPSLTKGGGVKKGLFKVPCDHHRELEAELKKMAPPNGRAILVLRGRCGCSVGRLEVPRPKKNRKIKK*






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