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Report for Sequence Feature Glyma09g37150

Feature Type:gene_model
Chromosome:Gm09
Start:42693394
stop:42694711
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g37150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39670AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204 SoyBaseE_val: 3.00E-48ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF137Panther CALCIUM-BINDING EF HAND FAMILY PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7K424UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein CML42 n=1 Tax=Medicago truncatula RepID=G7K424_MEDTR SoyBaseE_val: 3.00E-74ISS
UniRef100_I1L5W4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5W4_SOYBN SoyBaseE_val: 2.00E-146ISS

Expression Patterns of Glyma09g37150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37150
ParalogEvidenceComments
Glyma18g49540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g236800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g37150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g37150
>Glyma09g37150.1   sequence type=CDS   gene model=Glyma09g37150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATTCTTAGAGAAATTGACTTCCTTATTTCTGAGGGGAAGGCATCACAGAATGATGGCAACTCAACTTCTCCCTTGTTAGGTTTGGTGGACCTTTCCTTGTACTATACATGTTTCTACAAACTCCAGAGTTTTTTCGTAAGTTTCTGGGTTTTTCTTCTGTGCCAACTTTTTTCTAATGACTCAAGGGTGAGGGGAGAGGAGCAGGTATCAAAGCCTGAGGAGTTTAGCCACCAAGAGAATGAGTCAAAGAGAAGCTTAGATAGTGAGAATTATCTTGAGACGGATGAGGTCACAATGGTGATGGCAAAACTTGGATTTTTTTGCAGCTCAGAAAGTGAGGAACTTCAGGAGAAGTATGGTTCCAAGGAGCTTTCTAAACTGTTTGAGGAGCAGGAGCCAAGTTTGGAGGAGGTGAAGCAGGCTTTTGATGTTTTTGATGAGAACAAAGATGGCTTTATTGATGCTAAGGAGTTGCAGAGAGTTCTTTGCATTTTGGGATTGAAGGAAGCAGCAGAACTTGAGAACTGCAACAAGATGATCAGGATCTTTGATACAAATCAGGATGGAAGAATTGATTTCATTGAATTTGTAAAAATTATGGAAAATCGCTTCTGCTGA
Predicted protein sequences of Glyma09g37150
>Glyma09g37150.1   sequence type=predicted peptide   gene model=Glyma09g37150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILREIDFLISEGKASQNDGNSTSPLLGLVDLSLYYTCFYKLQSFFVSFWVFLLCQLFSNDSRVRGEEQVSKPEEFSHQENESKRSLDSENYLETDEVTMVMAKLGFFCSSESEELQEKYGSKELSKLFEEQEPSLEEVKQAFDVFDENKDGFIDAKELQRVLCILGLKEAAELENCNKMIRIFDTNQDGRIDFIEFVKIMENRFC*






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