SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G29010 | AT | Annotation by Michelle Graham. TAIR10: Biotin/lipoate A/B protein ligase family | chr3:11006945-11007977 FORWARD LENGTH=262 | SoyBase | E_val: 1.00E-134 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| PTHR12561 | Panther | LIPOATE-PROTEIN LIGASE | JGI | ISS | |
| PF03099 | PFAM | Biotin/lipoate A/B protein ligase family | JGI | ISS | |
| UniRef100_G7L210 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipoate protein ligase-like protein n=1 Tax=Medicago truncatula RepID=G7L210_MEDTR | SoyBase | E_val: 3.00E-149 | ISS |
| UniRef100_I1L5W1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5W1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g37130 not represented in the dataset |
Glyma09g37130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g236600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g37130.2 sequence type=transcript gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACGTCGTTTTAAATTGGAAAAAAAAAAAAAACCCAAAAACTCTGAACCCTCGTCCTCTCCTATTTTCTGTGTGAAGTGTGAACTCAAAAAACCCTCACCGGCTCAAGCATCAAAGAGGCACCGTCGCGAACCCCTGACTCCCTTAGAATCAAAGCACATGATAATGGCTGTGTTGGGTAAGGTAAAAGAAGCTGGACTTCCATTGATGAAGCTGGTGAAGTTGAGAGGGATGCCTATTTTGCAGCAATTGCATTTAGAGGAACGGCTGCTTCGAACCAGTTCAGATAATTGGTGCCTTATTAACGATGGAACCAGTTCCCCTGCCATTGTAATGGGTTTGTCTGGTATCATGTCATGGAGTGGTTTATTATACAGTGAAGTTTTTGAAGGGCTTGCTGGTTTTCATCTCCGTGAGAATGATTATGTTTTTGATGATCGCAAATTTGGTGGTAATGCTCAATCTATAACCAAGCACCGGTGGATACACCACACATCTTTTTTATGGGATTATGAGGTCAAGAACATGTCTTATCTCAAGTTACCTGCAAAGGCTCCTGAGTACCGATTAACAAGAAGTCACATGGATTTTGTTTGTCGAATGAAGGAGTATGTGCCGAGATCAGAATTTATAGAGAAAACTATTAAGGCTATTGGAGGCCAATTTTCTGTGAAATCCATTAGCTTGGAGTCCATAGACATTCCCTCTGTTTCTGAATATGTTCATACCACTAGGCTTCTCACAGAGCAGGAAATTCAAGAGGCTTGCACTATTCAAACTTGAAAAAATAGTTACAAAAGGCTTGGCAATAATTTATAAGCTATAGTATGTGAGAGAGAATTCATCAATGGGGGAATTGAGGATGCTGCTGTGGACATAATTTTTTCTTTTGACCATAATTTCTTCTGACCAAATTGTCTTTATCTTTTGGTTAGAATATTTCAGATGCTTTTAGTGAAAGATATTTTCTTTATTTTGTTCTTAAGTTTCAATTACCATACTACTTTTTCTGTATAACTTTAACCCTGGGTTATCTTTTTGTTATACAACTTTTAGATTTGGCAGTGTTGATGTTTGTTCAAACGCAAATTTCTATCTTGGTGGAATCATGCCTTGGCCTAATAAATTGGCATTGTAGCTTGAGTAGAGACCGAAGTTTTCATTGTTCATAAGATTCTAAGAAAG >Glyma09g37130.3 sequence type=transcript gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACGTCGTTTTAAATTGGAAAAAAAAAAAAAACCCAAAAACTCTGAACCCTCGTCCTCTCCTATTTTCTGTGTGAAGTGTGAACTCAAAAAACCCTCACCGGCTCAAGCATCAAAGAGGCACCGTCGCGAACCCCTGACTCCCTTAGAATCAAAGCACATGATAATGGCTGTGTTGGGTAAGGTAAAAGAAGCTGGACTTCCATTGATGAAGCTGGTGAAGTTGAGAGGGATGCCTATTTTGCAGCAATTGCATTTAGAGGAACGGCTGCTTCGAACCAGTTCAGATAATTGGTGCCTTATTAACGATGGAACCAGTTCCCCTGCCATTGTAATGGGTTTGTCTGGGAAACTTTCAGAACTCGTTGAAGCCAAGCCTGTGTTGCAAGATCGTATATCCATCATCAGAAGGTTTACTGGGGGAGGAACTGTTGTTGTAGACCAAAACACTATATTTGTTACGTTGATATGCAATAAAGATGCTGTTTCAAATGTGCAACCCTTTCCCCGCAGTATCATGTCATGGAGTGGTTTATTATACAGTGAAGTTTTTGAAGGGCTTGCTGGTTTTCATCTCCGTGAGAATGATTATGTTTTTGATGATCGCAAATTTGGTGGTAATGCTCAATCTATAACCAAGCACCGGTGGATACACCACACATCTTTTTTATGGGATTATGAGGTCAAGAACATGTCTTATCTCAAGTTACCTGCAAAGGCTCCTGAGTACCGATTAGTAAGCTTATGTTTTTTCATCTCCTCTCTCTCTCTGCATTGGAACTGTTCATATTCCCCGTGCTCCCTATCTTCTTTCGTTGGGTTGATATGCTGCTGCATATAGTCTTCTGATTCAGACAAGAAGTCACATGGATTTTGTTTGTCGAATGAAGGAGTATGTGCCGAGATCAGAATTTATAGAGAAAACTATTAAGGCTATTGGAGGCCAATTTTCTGTGAAATCCATTAGCTTGGAGTCCATAGACATTCCCTCTGTTTCTGAATATGTTCATACCACTAGGCTTCTCACAGAGCAGGAAATTCAAGAGGCTTGCACTATTCAAACTTGAAAAAATAGTTACAAAAGGCTTGGCAATAATTTATAAGCTATAGTATGTGAGAGAGAATTCATCAATGGGGGAATTGAGGATGCTGCTGTGGACATAATTTTTTCTTTTGACCATAATTTCTTCTGACCAAATTGTCTTTATCTTTTGGTTAGAATATTTCAGATGCTTTTAGTGAAAGATATTTTCTTTATTTTGTTCTTAAGTTTCAATTACCATACTACTTTTTCTGTATAACTTTAACCCTGGGTTATCTTTTTGTTATACAACTTTTAGATTTGGCAGTGTTGATGTTTGTTCAAACGCAAATTTCTATCTTGGTGGAATCATGCCTTGGCCTAATAAATTGGCATTGTAGCTTGAGTAGAGACCGAAGTTTTCATTGTTCATAAGATTCTAAGAAAG
>Glyma09g37130.1 sequence type=CDS gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAATGGCTGTGTTGGGTAAGGTAAAAGAAGCTGGACTTCCATTGATGAAGCTGGTGAAGTTGAGAGGGATGCCTATTTTGCAGCAATTGCATTTAGAGGAACGGCTGCTTCGAACCAGTTCAGATAATTGGTGCCTTATTAACGATGGAACCAGTTCCCCTGCCATTGTAATGGGTTTGTCTGGGAAACTTTCAGAACTCGTTGAAGCCAAGCCTGTGTTGCAAGATCGTATATCCATCATCAGAAGGTTTACTGGGGGAGGAACTGTTGTTGTAGACCAAAACACTATATTTGTTACGTTGATATGCAATAAAGATGCTGTTTCAAATGTGCAACCCTTTCCCCGCAGTATCATGTCATGGAGTGGTTTATTATACAGTGAAGTTTTTGAAGGGCTTGCTGGTTTTCATCTCCGTGAGAATGATTATGTTTTTGATGATCGCAAATTTGGTGGTAATGCTCAATCTATAACCAAGCACCGGTGGATACACCACACATCTTTTTTATGGGATTATGAGGTCAAGAACATGTCTTATCTCAAGTTACCTGCAAAGGCTCCTGAGTACCGATTAACAAGAAGTCACATGGATTTTGTTTGTCGAATGAAGGAGTATGTGCCGAGATCAGAATTTATAGAGAAAACTATTAAGGCTATTGGAGGCCAATTTTCTGTGAAATCCATTAGCTTGGAGTCCATAGACATTCCCTCTGTTTCTGAATATGTTCATACCACTAGGCTTCTCACAGAGCAGGAAATTCAAGAGGCTTGCACTATTCAAACTTGA >Glyma09g37130.2 sequence type=CDS gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAATGGCTGTGTTGGGTAAGGTAAAAGAAGCTGGACTTCCATTGATGAAGCTGGTGAAGTTGAGAGGGATGCCTATTTTGCAGCAATTGCATTTAGAGGAACGGCTGCTTCGAACCAGTTCAGATAATTGGTGCCTTATTAACGATGGAACCAGTTCCCCTGCCATTGTAATGGGTTTGTCTGGTATCATGTCATGGAGTGGTTTATTATACAGTGAAGTTTTTGAAGGGCTTGCTGGTTTTCATCTCCGTGAGAATGATTATGTTTTTGATGATCGCAAATTTGGTGGTAATGCTCAATCTATAACCAAGCACCGGTGGATACACCACACATCTTTTTTATGGGATTATGAGGTCAAGAACATGTCTTATCTCAAGTTACCTGCAAAGGCTCCTGAGTACCGATTAACAAGAAGTCACATGGATTTTGTTTGTCGAATGAAGGAGTATGTGCCGAGATCAGAATTTATAGAGAAAACTATTAAGGCTATTGGAGGCCAATTTTCTGTGAAATCCATTAGCTTGGAGTCCATAGACATTCCCTCTGTTTCTGAATATGTTCATACCACTAGGCTTCTCACAGAGCAGGAAATTCAAGAGGCTTGCACTATTCAAACTTGA >Glyma09g37130.3 sequence type=CDS gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAATGGCTGTGTTGGGTAAGGTAAAAGAAGCTGGACTTCCATTGATGAAGCTGGTGAAGTTGAGAGGGATGCCTATTTTGCAGCAATTGCATTTAGAGGAACGGCTGCTTCGAACCAGTTCAGATAATTGGTGCCTTATTAACGATGGAACCAGTTCCCCTGCCATTGTAATGGGTTTGTCTGGGAAACTTTCAGAACTCGTTGAAGCCAAGCCTGTGTTGCAAGATCGTATATCCATCATCAGAAGGTTTACTGGGGGAGGAACTGTTGTTGTAGACCAAAACACTATATTTGTTACGTTGATATGCAATAAAGATGCTGTTTCAAATGTGCAACCCTTTCCCCGCAGTATCATGTCATGGAGTGGTTTATTATACAGTGAAGTTTTTGAAGGGCTTGCTGGTTTTCATCTCCGTGAGAATGATTATGTTTTTGATGATCGCAAATTTGGTGGTAATGCTCAATCTATAACCAAGCACCGGTGGATACACCACACATCTTTTTTATGGGATTATGAGGTCAAGAACATGTCTTATCTCAAGTTACCTGCAAAGGCTCCTGAGTACCGATTAGTAAGCTTATGTTTTTTCATCTCCTCTCTCTCTCTGCATTGGAACTGTTCATATTCCCCGTGCTCCCTATCTTCTTTCGTTGGGTTGATATGCTGCTGCATATAG
>Glyma09g37130.1 sequence type=predicted peptide gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMAVLGKVKEAGLPLMKLVKLRGMPILQQLHLEERLLRTSSDNWCLINDGTSSPAIVMGLSGKLSELVEAKPVLQDRISIIRRFTGGGTVVVDQNTIFVTLICNKDAVSNVQPFPRSIMSWSGLLYSEVFEGLAGFHLRENDYVFDDRKFGGNAQSITKHRWIHHTSFLWDYEVKNMSYLKLPAKAPEYRLTRSHMDFVCRMKEYVPRSEFIEKTIKAIGGQFSVKSISLESIDIPSVSEYVHTTRLLTEQEIQEACTIQT* >Glyma09g37130.2 sequence type=predicted peptide gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMAVLGKVKEAGLPLMKLVKLRGMPILQQLHLEERLLRTSSDNWCLINDGTSSPAIVMGLSGIMSWSGLLYSEVFEGLAGFHLRENDYVFDDRKFGGNAQSITKHRWIHHTSFLWDYEVKNMSYLKLPAKAPEYRLTRSHMDFVCRMKEYVPRSEFIEKTIKAIGGQFSVKSISLESIDIPSVSEYVHTTRLLTEQEIQEACTIQT* >Glyma09g37130.3 sequence type=predicted peptide gene model=Glyma09g37130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMAVLGKVKEAGLPLMKLVKLRGMPILQQLHLEERLLRTSSDNWCLINDGTSSPAIVMGLSGKLSELVEAKPVLQDRISIIRRFTGGGTVVVDQNTIFVTLICNKDAVSNVQPFPRSIMSWSGLLYSEVFEGLAGFHLRENDYVFDDRKFGGNAQSITKHRWIHHTSFLWDYEVKNMSYLKLPAKAPEYRLVSLCFFISSLSLHWNCSYSPCSLSSFVGLICCCI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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