SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g37076

Feature Type:gene_model
Chromosome:Gm09
Start:42651467
stop:42657730
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g37076
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01150AT Annotation by Michelle Graham. TAIR10: polypyrimidine tract-binding protein 1 | chr3:51732-54344 FORWARD LENGTH=399 SoyBaseE_val: 0ISS
GO:0000381GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of alternative mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009846GO-bp Annotation by Michelle Graham. GO Biological Process: pollen germination SoyBaseN/AISS
GO:0043484GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of RNA splicing SoyBaseN/AISS
GO:0000932GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG1190 KOG Polypyrimidine tract-binding protein JGI ISS
PTHR11546Panther HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN JGI ISS
PTHR11546:SF16Panther PTB (POLYPYRIMIDINE TRACT-BINDING), RNA BINDING JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_B9T4F5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polypyrimidine tract binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4F5_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233848FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233848F related cluster n=1 Tax=unknown RepID=UPI000233848F SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g37076
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g37076 not represented in the dataset
Glyma09g37076 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37076
ParalogEvidenceComments
Glyma18g49580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37076 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g236000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g37076
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g37076
>Glyma09g37076.1   sequence type=CDS   gene model=Glyma09g37076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCTCGAACCAGCACCAGTTCCGATACACTCAAACCCCTTCCAAGGTGCTCCACCTTCGCAACCTTCCCTGGGAATGCTCCGAAGAGGAACTCAGAGAGCTCTGCAAACCCTTCGGTAAGATCATCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTCGAATTCGCGGATCTAAATCAAGCCATTTCGATGGTTTCATATTATGCTTCATCTTCAGAACCAGCTATGGTTCGTGGTAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGCCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGTGTGGAAGCTGGGGATGTGAGCATTGATGTTATCCATTTGGTGTTTTCTGCTTTTGGCTTTGTTCACAAAATTGCTACATTCGAAAAGACTGCAGGTTTTCAGGCTCTGATTCAGTTCACTGATGCTGAGACTGCTTCTTCAGCTCGGGATGCACTGGATGGAAGAAGTATACCAAGATACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGAATTTCATATTCCGCACATAAAGATCTGAATATCAAATTTCAGTCAAATCGCAGCAGGGACTATACAAATCCCATGCTTCCTGTTAATTATACCGCTATTGAGGGGGCAGTACAGACTGCTGTAGGCCCTGATGGGAAGAGGAAAGAACCTGAGAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCCTCCACACGGTGTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATATCATAACGGCATCAGCTGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGATTATACAGTGCCGGATCCTAGTCTGCTTGCAGCACAAGGTCCACCAACAGCTTGGCAAAATCCTCAGGCTGCATCTATGTACCCTGGTAGTGCCCCTGCTTATCATACTCAAGTTCCCGGCGGACAAGTGCCATCATGGGATCCATCCCTGCAGGCAGTTAGACCGAGTTATGCATCGGCACCTGGTACTTTTCCTGTTCAAACTGGTGCAGCTCCTCCAATGCCGTCCTATGCGCCAGCATCAGCTATGCCTGTTGCTTCCTCACCTCATGCACAAAGCAGCCCCATGGCTCATAATGCAAATCCAATGGGAATTGCTCAGCTCGGGGTTCCACCCAATGTAAATTTACAGTCCAGTGGTGCTTCACTTTCAGCGCCTGGTTCCTCACCTCTCATGCAAACCAGTCAGGCTGCTCAAGGATTGCTTCAGCCAAATGCAAGACCTGGTGGTGCTTCACCTTCAGGTCAACATTATTATGGTTAG
Predicted protein sequences of Glyma09g37076
>Glyma09g37076.1   sequence type=predicted peptide   gene model=Glyma09g37076   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSNQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQGPPTAWQNPQAASMYPGSAPAYHTQVPGGQVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNANPMGIAQLGVPPNVNLQSSGASLSAPGSSPLMQTSQAAQGLLQPNARPGGASPSGQHYYG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo