Glyma09g37070 - SoyBase

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Report for Sequence Feature Glyma09g37070

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42644886
stop:	42650070
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15270	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr5:4958738-4960947 FORWARD LENGTH=548	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG2190	KOG	PolyC-binding proteins alphaCP-1 and related KH domain proteins	JGI		ISS
PTHR10288	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR10288:SF53	Panther	KH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7KKX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly(RC)-binding protein n=1 Tax=Medicago truncatula RepID=G7KKX1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L5V5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5V5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g37070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37070

Paralog	Evidence	Comments
Glyma18g49600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g235900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g37070

Limit To All Plant Sequences

>Glyma09g37070.4   sequence type=transcript   gene model=Glyma09g37070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAAATAAATCAGGAAGGCGGCGAAGAATCCATCATACATAACGAACCCTGAAACAATTTCTCCAACCCTAGCGCGCACACACACGCACAATCCTTTCTCTCTCTGAAACCGTACGTTACGTAACCGTAGGCGATATCACAAATTCACAGCACACACAGTCCCCACTCTCTACAATGACCGGTCAACGCAGCTCCTACGGCAAGCGCTCCCACTCGCACTCCGATTCCGACGCCGGCTCCAAAAACAAGCGCCGCAACCCCGCCGCCGACGAGTCCTCCTCCTCCCTCATCACCGCTGACGACACCGTCTTCCGCTACCTCTGCCCCGTCCGCAAGATCGGCAGCGTCATTGGCCGCGGCGGCGACATCGTCAAGCAGCTCCGCGCCGACACCAAGGCCAAGATTCGCATCGGTGACGCGCTACCCGGCTGCGACGAGCGCGTTGTCACCATCCACAGTTCCTCCGAGGAGACCAACCATTTCGACGAGACCGATGATCTCGTCTCGCCCGCGCAGGACGCGCTTTTTAGGGTTCACCAGCGCGTGATTGCGGAGGACGCACGTGAGGATGAGGACGAGGAGAGGAATCATGTGACTGCGAAGCTTCTCGTGCCGTCCGATCAGATCGGATGCGTCATTGGAAAAGGCGGCCAGATCGTGCAGAATATACGGAGCGAAACCGGCGCGCAGATTCGGATCCTTAAGGATGATCGCTTGCCTCCTTGCGCGTTAAGCACCGATGAACTTGTTCAGATATCTGGTGAGGCTGCGGTTGTGAAGAAAGCTCTGTTTCAAATTGCTGCTCAGATTCGTGATAATCCATCGCGGTCTCAGCATCTGCTTGCTTCTGCAGTTCCTGGTGGGTATGCAACTGGTGGTCCTGGTGCAGGGGCTCCGATTATGGGAGTGGCTCCTTTTGTGGGTGCTTATGGGGGGTATAAAGGTGATACTGGTGACTGGTCACGGTCTTTGTATCCTGCCCCAAGGGATGAAGCGTCTATGAGAGAGTTTTCAGTTCGGTTTGTCTGTCCTACTGGGAACATTGGTGGTGTGATAGGAAAGGGTGGTGCCATAATAAATCAAATCAGGCAGGATTCTGGGGCAACCATCAAAGTTGATAGTTCAGCAACTGAAGGAGATGACTGTTTGATAATCATTTCGACGAAAGAGTTTTTTGAGGATTCTTTCTCTCCAACTATAGAAGCTGCTGTGCGATTGCAACCTCGGTGCAGTGAGAAAGTGGAAAGAGATTCAGGGATTGTCTCTTTCACTACCCGTCTTCTGGTGCCAACCTCCCGAATTGGTTGCCTTATTGGTAAAGGAGGGACAATTGTGACTGAAATGAGGAGGCTTACAAAAGCAAACATTCGCATCCTGTCAAAGGATAATCTTCCTAAAATTGCGTCTGAAGATGATGAAATGGTGCAGATTTCCGGAGACCTTGATGTTGCTAAGGATGCTCTTGTGCAAGCACTTACACGGCTAAGAGCAAATCTTTTTGATAAGGAGCGTGCTGTCTCAGGATTTCTTCCGGTGCTTCCATATCTTCCTGCTTCAGTTGATGGATCAGATGGTTTGAACTATGACAGTAGGGATGGTAAACGACATGGACGTGGTGGATATTCCGGTGGGTATGGAGGTTCAAGTGATTTGGCATCTGGTGATGGTTATGGAAGCTATGGAAATTCACAGCTTGGTAGCAGTGGTGGTGCTTATGGAAATTATTCTTTGGGACGAACTAGTGCCTATGGGTCTTCTCAGAATGGTTCTTCTCGGAGGAGAAACCATGCTTACTAAAACTTGATGGGTCCCTGCAGGTGTCAATATTTTCCTGTCATTAGCAAGTTATGGGTATTCTTCATCATTCGACTTTGATTAATCATATTTATGGATGTACTTCAGTACTTCAGATATGATGAATGAGAGGTATGGAATCTGTTTATGTGCTTCTTGTTCTTGGCTAAGGTAATACATTTGGAGGCATGTAAAATCTTTCATGATTCAGAAATAGAATAATATAGTACATGCTTGTTGCAGCCATGATTAAATAGGGTGGAGTGGCCCATTTGACAGTCCTAGTTTTGGGCAGCTTTTTGCAATAAAACCTTTATATGCCTAACATGGCTTTTACACAAAAATTATGACATGTTGATGTCTCTCTTTTTGTGTGTGTGGTCTGTGTGGTGATACATTGTAGTTCATGCATGCACCTGAATTAATGCTCCACATAAATGCTTAAAAGAAAAAGGAAAACATCTATTCTTTAGTTGTTGACTAGTATGCTTTACTATCTGATCCGGATTGGTATGCCTACATGAGTGTTATTAAATAGCAGCCATGGTCGAAAGCAGTGCTGGATTTTTTGTCAACTGCCATAGGAAATATATGAAAATAGGCCCACCATGGTGTGTTTATATGGCGGAGTTTCAGCCTTCCACCATCCACCATTGATTACACTGCATTACCTTAAGTACTTGTCTGGAAATTCTAGCTGTAATGAACAGGAGGCTTGGAGGACATGGATTTCTTTTATTAGATGTTAGTTTTGTATTGTATTTAGGCAGTTCAATAAAAAAAGGAAGAATGAAATGCTAACATATGCCATTTTGATGATCCCTGGGATTTTGGAAATCAAGCAATATTTTGAGTTAACGTGGATAATTGAAATACGGTGACGTGTGGTATGTATTTTCTTTTAGCGCACTTTTGGTCTGTAGCTTTAATTGAATGCTGCAGCTGAATCACCCTTATTTGTAACTCATTTTGCCAGGTCATTTCAGGTATGAAACAGGTAAGCTCCCTCCCTTAGGTCATTTACGATGCACCGATGTGCAGAAGCAAATGTGCCTAACAGGAATTTTCTAAATCAAATGAAGTAGATTTGGGTCTGGTGATGGATGATGGATCCCGTTGAAAAGTTTTTTTTTTCCCTTGTCTTGAGCATGATTAGTATAGAGAATATCTGATGTTTGTCATAATACAAAAGCATGGTGGTACCACTAACTTTGTTATTCTGTTCTCAAACGTTCCCCCCCCCCCCCCCCCCCCCCCCATTTTTCGAGTGGCTTGCTATTTTGCACCTATAGTTAAACGAATTAGCAAATCAGTTGTTTCAAAGGAAGTCATATTGTAGAATTTCAACTTATGAGTGTCTTTTATCGTTCTCGATTAGCAGAGAGATGTGATTGTGATTCAAGGATGTGATGTTTTGGATTATCCAATGTGCTGCAAACCGGTGATTTAAGTATTTAGTATGGAACTAAGTATATGATTTGATTAAAGTTTGTCAACATAATTTTAGATTAAAAAGTATGTTGTAGTCTTAAGTCTGATAAAATAAGTTTATTATAATTTTTG

Coding sequences of Glyma09g37070

Limit To All Plant Sequences

>Glyma09g37070.3   sequence type=CDS   gene model=Glyma09g37070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGGTCAACGCAGCTCCTACGGCAAGCGCTCCCACTCGCACTCCGATTCCGACGCCGGCTCCAAAAACAAGCGCCGCAACCCCGCCGCCGACGAGTCCTCCTCCTCCCTCATCACCGCTGACGACACCGTCTTCCGCTACCTCTGCCCCGTCCGCAAGATCGGCAGCGTCATTGGCCGCGGCGGCGACATCGTCAAGCAGCTCCGCGCCGACACCAAGGCCAAGATTCGCATCGGTGACGCGCTACCCGGCTGCGACGAGCGCGTTGTCACCATCCACAGTTCCTCCGAGGAGACCAACCATTTCGACGAGACCGATGATCTCGTCTCGCCCGCGCAGGACGCGCTTTTTAGGGTTCACCAGCGCGTGATTGCGGAGGACGCACGTGAGGATGAGGACGAGGAGAGGAATCATGTGACTGCGAAGCTTCTCGTGCCGTCCGATCAGATCGGATGCGTCATTGGAAAAGGCGGCCAGATCGTGCAGAATATACGGAGCGAAACCGGCGCGCAGATTCGGATCCTTAAGGATGATCGCTTGCCTCCTTGCGCGTTAAGCACCGATGAACTTGTTCAGATATCTGGTGAGGCTGCGGTTGTGAAGAAAGCTCTGTTTCAAATTGCTGCTCAGATTCGTGATAATCCATCGCGGTCTCAGCATCTGCTTGCTTCTGCAGTTCCTGGTGGGTATGCAACTGGTGGTCCTGGTGCAGGGGCTCCGATTATGGGAGTGGCTCCTTTTGTGGGTGCTTATGGGGGGTATAAAGGTGATACTGGTGACTGGTCACGGTCTTTGTATCCTGCCCCAAGGGATGAAGCGTCTATGAGAGAGTTTTCAGTTCGGTTTGTCTGTCCTACTGGGAACATTGGTGGTGTGATAGGAAAGGGTGGTGCCATAATAAATCAAATCAGGCAGGATTCTGGGGCAACCATCAAAGTTGATAGTTCAGCAACTGAAGGAGATGACTGTTTGATAATCATTTCGACGAAAGAGTTTTTTGAGGATTCTTTCTCTCCAACTATAGAAGCTGCTGTGCGATTGCAACCTCGGTGCAGTGAGAAAGTGGAAAGAGATTCAGGGATTGTCTCTTTCACTACCCGTCTTCTGGTGCCAACCTCCCGAATTGGTTGCCTTATTGGTAAAGGAGGGACAATTGTGACTGAAATGAGGAGGCTTACAAAAGCAAACATTCGCATCCTGTCAAAGGATAATCTTCCTAAAATTGCGTCTGAAGATGATGAAATGGTGCAGATTTCCGGAGACCTTGATGTTGCTAAGGATGCTCTTGTGCAAGCACTTACACGGCTAAGAGCAAATCTTTTTGATAAGGAGCGTGCTGTCTCAGGATTTCTTCCGGTGCTTCCATATCTTCCTGCTTCAGTTGATGGATCAGATGGTTTGAACTATGACAGTAGGGATGGTAAACGACATGGACGTGGTGGATATTCCGGTGGGTATGGAGGTTCAAGTGATTTGGCATCTGGTGATGGTTATGGAAGCTATGGAAATTCACAGCTTGGTAGCAGTGGTGGTGCTTATGGAAATTATTCTTTGGGACGAACTAGTGCCTATGGGTCTTCTCAGAATGGTTCTTCTCGGAGGAGAAACCATGCTTACTAA

>Glyma09g37070.4   sequence type=CDS   gene model=Glyma09g37070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGGTCAACGCAGCTCCTACGGCAAGCGCTCCCACTCGCACTCCGATTCCGACGCCGGCTCCAAAAACAAGCGCCGCAACCCCGCCGCCGACGAGTCCTCCTCCTCCCTCATCACCGCTGACGACACCGTCTTCCGCTACCTCTGCCCCGTCCGCAAGATCGGCAGCGTCATTGGCCGCGGCGGCGACATCGTCAAGCAGCTCCGCGCCGACACCAAGGCCAAGATTCGCATCGGTGACGCGCTACCCGGCTGCGACGAGCGCGTTGTCACCATCCACAGTTCCTCCGAGGAGACCAACCATTTCGACGAGACCGATGATCTCGTCTCGCCCGCGCAGGACGCGCTTTTTAGGGTTCACCAGCGCGTGATTGCGGAGGACGCACGTGAGGATGAGGACGAGGAGAGGAATCATGTGACTGCGAAGCTTCTCGTGCCGTCCGATCAGATCGGATGCGTCATTGGAAAAGGCGGCCAGATCGTGCAGAATATACGGAGCGAAACCGGCGCGCAGATTCGGATCCTTAAGGATGATCGCTTGCCTCCTTGCGCGTTAAGCACCGATGAACTTGTTCAGATATCTGGTGAGGCTGCGGTTGTGAAGAAAGCTCTGTTTCAAATTGCTGCTCAGATTCGTGATAATCCATCGCGGTCTCAGCATCTGCTTGCTTCTGCAGTTCCTGGTGGGTATGCAACTGGTGGTCCTGGTGCAGGGGCTCCGATTATGGGAGTGGCTCCTTTTGTGGGTGCTTATGGGGGGTATAAAGGTGATACTGGTGACTGGTCACGGTCTTTGTATCCTGCCCCAAGGGATGAAGCGTCTATGAGAGAGTTTTCAGTTCGGTTTGTCTGTCCTACTGGGAACATTGGTGGTGTGATAGGAAAGGGTGGTGCCATAATAAATCAAATCAGGCAGGATTCTGGGGCAACCATCAAAGTTGATAGTTCAGCAACTGAAGGAGATGACTGTTTGATAATCATTTCGACGAAAGAGTTTTTTGAGGATTCTTTCTCTCCAACTATAGAAGCTGCTGTGCGATTGCAACCTCGGTGCAGTGAGAAAGTGGAAAGAGATTCAGGGATTGTCTCTTTCACTACCCGTCTTCTGGTGCCAACCTCCCGAATTGGTTGCCTTATTGGTAAAGGAGGGACAATTGTGACTGAAATGAGGAGGCTTACAAAAGCAAACATTCGCATCCTGTCAAAGGATAATCTTCCTAAAATTGCGTCTGAAGATGATGAAATGGTGCAGATTTCCGGAGACCTTGATGTTGCTAAGGATGCTCTTGTGCAAGCACTTACACGGCTAAGAGCAAATCTTTTTGATAAGGAGCGTGCTGTCTCAGGATTTCTTCCGGTGCTTCCATATCTTCCTGCTTCAGTTGATGGATCAGATGGTTTGAACTATGACAGTAGGGATGGTAAACGACATGGACGTGGTGGATATTCCGGTGGGTATGGAGGTTCAAGTGATTTGGCATCTGGTGATGGTTATGGAAGCTATGGAAATTCACAGCTTGGTAGCAGTGGTGGTGCTTATGGAAATTATTCTTTGGGACGAACTAGTGCCTATGGGTCTTCTCAGAATGGTTCTTCTCGGAGGAGAAACCATGCTTACTAA

Predicted protein sequences of Glyma09g37070

Limit To All Plant Sequences

>Glyma09g37070.3   sequence type=predicted peptide   gene model=Glyma09g37070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGQRSSYGKRSHSHSDSDAGSKNKRRNPAADESSSSLITADDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETNHFDETDDLVSPAQDALFRVHQRVIAEDAREDEDEERNHVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPPCALSTDELVQISGEAAVVKKALFQIAAQIRDNPSRSQHLLASAVPGGYATGGPGAGAPIMGVAPFVGAYGGYKGDTGDWSRSLYPAPRDEASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIISTKEFFEDSFSPTIEAAVRLQPRCSEKVERDSGIVSFTTRLLVPTSRIGCLIGKGGTIVTEMRRLTKANIRILSKDNLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLFDKERAVSGFLPVLPYLPASVDGSDGLNYDSRDGKRHGRGGYSGGYGGSSDLASGDGYGSYGNSQLGSSGGAYGNYSLGRTSAYGSSQNGSSRRRNHAY*

>Glyma09g37070.4   sequence type=predicted peptide   gene model=Glyma09g37070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGQRSSYGKRSHSHSDSDAGSKNKRRNPAADESSSSLITADDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETNHFDETDDLVSPAQDALFRVHQRVIAEDAREDEDEERNHVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPPCALSTDELVQISGEAAVVKKALFQIAAQIRDNPSRSQHLLASAVPGGYATGGPGAGAPIMGVAPFVGAYGGYKGDTGDWSRSLYPAPRDEASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIISTKEFFEDSFSPTIEAAVRLQPRCSEKVERDSGIVSFTTRLLVPTSRIGCLIGKGGTIVTEMRRLTKANIRILSKDNLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLFDKERAVSGFLPVLPYLPASVDGSDGLNYDSRDGKRHGRGGYSGGYGGSSDLASGDGYGSYGNSQLGSSGGAYGNYSLGRTSAYGSSQNGSSRRRNHAY*

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