Glyma09g37010 - SoyBase

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Report for Sequence Feature Glyma09g37010

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42584470
stop:	42585965
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g37010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66370	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 113 \| chr1:24753634-24754604 FORWARD LENGTH=246	SoyBase	E_val: 8.00E-56	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0031540	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_B8YPF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3 MYB transcription factor splice variant 1 n=1 Tax=Vitis vinifera RepID=B8YPF8_VITVI	SoyBase	E_val: 1.00E-67	ISS
UniRef100_UPI0002338465	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338465 related cluster n=1 Tax=unknown RepID=UPI0002338465	SoyBase	E_val: 2.00E-173	ISS

Expression Patterns of Glyma09g37010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g37010

Paralog	Evidence	Comments
Glyma18g49670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g37010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g235300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g37010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g37010

Limit To All Plant Sequences

>Glyma09g37010.2   sequence type=CDS   gene model=Glyma09g37010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGACCATCAAGTGTGAGAAAAGGCGCATGGAGTAAATGCGAAGACGACCTTCTAAGAGCTTGCGTGCAACTTTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCTGGGTTGAACAGGTGCCGCAAGAGCTGTAGATTGAGATGGCTGAACTATCTAAAACCAAATATCAAGAGGGGAGATTTCAGTGAAGATGAGGTTGACATGATGATCAGAATGCATAAGCTTTTGGGAAACAGATGGTCCCTGATTGCGGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAAAATTACTGGAACACCTACATGCGCCGTAAAGTATACTCTCACAAGAAAGACAACAACGTAGAGAAGCAAGCTGATGAGGCCAAATCAACAGTGCAACGGCACCAAGTGATAAAGCCTATACCTCGAGCTTTAACAAAAACAGCCCCACGGTTGCAAGGGAAATTGTTTAATAGTTCCAAAGTCGGTGTTAGTGAAGCAGCAGGTGCAGCTTCATCAGGGTCTGGCAATTGGTGGGAAACTTTGTTAGAAAACAAGAAAGACAATCATGAAGGTAACATTATTAATAACACGTGCTTCTTTGGTGGGGCAGATGGAGAGCTTGACCTTTGGGATGAGGAGCTTAATCCAATTGCTTGTGACTTTCTTTCTGAAGGTGAAAATTGGAGTGATTTTCTTCTTGACTTATAG

Predicted protein sequences of Glyma09g37010

Limit To All Plant Sequences

>Glyma09g37010.2   sequence type=predicted peptide   gene model=Glyma09g37010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGPSSVRKGAWSKCEDDLLRACVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDMMIRMHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYMRRKVYSHKKDNNVEKQADEAKSTVQRHQVIKPIPRALTKTAPRLQGKLFNSSKVGVSEAAGAASSGSGNWWETLLENKKDNHEGNIINNTCFFGGADGELDLWDEELNPIACDFLSEGENWSDFLLDL*

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