Glyma09g36941 - SoyBase

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Report for Sequence Feature Glyma09g36941

Feature Type:	gene_model
Chromosome:	Gm09
Start:	42526367
stop:	42529209
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g36941

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26670	AT	Annotation by Michelle Graham. TAIR10: Vesicle transport v-SNARE family protein \| chr1:9216103-9217793 FORWARD LENGTH=222	SoyBase	E_val: 2.00E-86	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0046907	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005770	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: late endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000149	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNARE binding	SoyBase	N/A	ISS
GO:0005483	GO-mf	Annotation by Michelle Graham. GO Molecular Function: soluble NSF attachment protein activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1666	KOG	V-SNARE	JGI		ISS
PTHR21230	Panther	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	JGI		ISS
PTHR21230:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05008	PFAM	Vesicle transport v-SNARE protein N-terminus	JGI		ISS
PF12352	PFAM	Snare region anchored in the vesicle membrane C-terminus	JGI		ISS
UniRef100_A2Q3R8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vesicle transport v-SNARE n=1 Tax=Medicago truncatula RepID=A2Q3R8_MEDTR	SoyBase	E_val: 1.00E-103	ISS
UniRef100_UPI000233848B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233848B related cluster n=1 Tax=unknown RepID=UPI000233848B	SoyBase	E_val: 8.00E-163	ISS

Expression Patterns of Glyma09g36941

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g36941 not represented in the dataset	Glyma09g36941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g36941 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g234700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g36941

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g36941

Limit To All Plant Sequences

>Glyma09g36941.2   sequence type=transcript   gene model=Glyma09g36941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGCTCCTTTTGTTATTACGTTTACCACTCAATTTTTTCTCCAGCAACTTCAGGTGCATGTATTCATGCTCAATTTCATCTCTGTCTCACTCGAATTAATTGATTAATTACCCGAATTCTGTATTGGTGGCTAACCTTCGATGAGAAGGTTCTGCATTGTGTTTTCATTTTTTGGATTGCATTGAAATTTTGATGTTGAACAGAGAATGAGTTGTGGGGAGTTTGAGGGATATGAGCGGCAGTATTGCGAGCTTTCAGCAAATCTATCAAAAGCATGCATTGATAATGTAGCTGCTCCTCTTAATGGAGAGCTAAAGAAACAAAAAAAATCTGAAATAAAGGAGGGAATTGAGGAGGGAGAAGCTTTGATTCGAAAAATGGACCTTGATGCAAGAAGTTTACAGCCAGACTTGAAGGCTGTGCTTCTTGCTAAGGTGAGGGAGTACAAAGCAGATCTGAACAACATTAAAAGAGAAGTGAAGAAAATTATATCTGCTGACTTAAACCCTTCTTCTGCAAGGGATGAGTTGTTGGAATCGACCATGACAAATGCTATGATGAAGGCATCAGCTGATCATAGAGAAAGAGAAAGATTAATGATATCAACCGAAAGGTTGAACAAGTCCAGTGACAGAATTAACGACAGTAGAGGAACAATGTTGGAAACAGAAGACCTTGGCATTTCGATTCTTCAAGATTTGCATTCACAGAGACAATCTCTACTGCATACACATGACACGCTTCATGGAGTGGATGATAACACAGACAAGAGCAAGAAAATTTTGTCTAACATGTCAAGAAGGATGGACAAAAGCAAATGGATTTTGAGCACCATTGCTGTGCTCCTGATTTTTGTTATAATCTTGATTGTGTACTTCAAACTTTCTTAGTAGCTAATACCATATCATTTCTCCCATGATCATGAGAAGCGGTCCATACTCAATTTTGTATTACAAATAAATTGGCAGCGATAACCTAACGAACATAATAGCAGGGACAGAATGGTTCCTTTAGAAAAGACACTCCGAGGATGTTTTGCTCCCTTGTTTCCTCAATTACCAATTCGATTCTACTCTAAGCTATTTGTTACCAACAGAAAATGTGCAAAAATAT

Coding sequences of Glyma09g36941

Limit To All Plant Sequences

>Glyma09g36941.1   sequence type=CDS   gene model=Glyma09g36941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGTGGGGAGTTTGAGGGATATGAGCGGCAGTATTGCGAGCTTTCAGCAAATCTATCAAAAGCATGCATTGATAATGTAGCTGCTCCTCTTAATGGAGAGCTAAAGAAACAAAAAAAATCTGAAATAAAGGAGGGAATTGAGGAGGGAGAAGCTTTGATTCGAAAAATGGACCTTGATGCAAGAAGTTTACAGCCAGACTTGAAGGCTGTGCTTCTTGCTAAGGTGAGGGAGTACAAAGCAGATCTGAACAACATTAAAAGAGAAGTGAAGAAAATTATATCTGCTGACTTAAACCCTTCTTCTGCAAGGGATGAGTTGTTGGAATCGACCATGACAAATGCTATGATGAAGGCATCAGCTGATCATAGAGAAAGAGAAAGATTAATGATATCAACCGAAAGGTTGAACAAGTCCAGTGACAGAATTAACGACAGTAGAGGAACAATGTTGGAAACAGAAGACCTTGGCATTTCGATTCTTCAAGATTTGCATTCACAGAGACAATCTCTACTGCATACACATGACACGCTTCATGGAGTGGATGATAACACAGACAAGAGCAAGAAAATTTTGTCTAACATGTCAAGAAGGATGGACAAAAGCAAATGGATTTTGAGCACCATTGCTGTGCTCCTGATTTTTGTTATAATCTTGATTGTGTACTTCAAACTTTCTTAG

>Glyma09g36941.2   sequence type=CDS   gene model=Glyma09g36941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGTGGGGAGTTTGAGGGATATGAGCGGCAGTATTGCGAGCTTTCAGCAAATCTATCAAAAGCATGCATTGATAATGTAGCTGCTCCTCTTAATGGAGAGCTAAAGAAACAAAAAAAATCTGAAATAAAGGAGGGAATTGAGGAGGGAGAAGCTTTGATTCGAAAAATGGACCTTGATGCAAGAAGTTTACAGCCAGACTTGAAGGCTGTGCTTCTTGCTAAGGTGAGGGAGTACAAAGCAGATCTGAACAACATTAAAAGAGAAGTGAAGAAAATTATATCTGCTGACTTAAACCCTTCTTCTGCAAGGGATGAGTTGTTGGAATCGACCATGACAAATGCTATGATGAAGGCATCAGCTGATCATAGAGAAAGAGAAAGATTAATGATATCAACCGAAAGGTTGAACAAGTCCAGTGACAGAATTAACGACAGTAGAGGAACAATGTTGGAAACAGAAGACCTTGGCATTTCGATTCTTCAAGATTTGCATTCACAGAGACAATCTCTACTGCATACACATGACACGCTTCATGGAGTGGATGATAACACAGACAAGAGCAAGAAAATTTTGTCTAACATGTCAAGAAGGATGGACAAAAGCAAATGGATTTTGAGCACCATTGCTGTGCTCCTGATTTTTGTTATAATCTTGATTGTGTACTTCAAACTTTCTTAG

Predicted protein sequences of Glyma09g36941

Limit To All Plant Sequences

>Glyma09g36941.1   sequence type=predicted peptide   gene model=Glyma09g36941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCGEFEGYERQYCELSANLSKACIDNVAAPLNGELKKQKKSEIKEGIEEGEALIRKMDLDARSLQPDLKAVLLAKVREYKADLNNIKREVKKIISADLNPSSARDELLESTMTNAMMKASADHRERERLMISTERLNKSSDRINDSRGTMLETEDLGISILQDLHSQRQSLLHTHDTLHGVDDNTDKSKKILSNMSRRMDKSKWILSTIAVLLIFVIILIVYFKLS*

>Glyma09g36941.2   sequence type=predicted peptide   gene model=Glyma09g36941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCGEFEGYERQYCELSANLSKACIDNVAAPLNGELKKQKKSEIKEGIEEGEALIRKMDLDARSLQPDLKAVLLAKVREYKADLNNIKREVKKIISADLNPSSARDELLESTMTNAMMKASADHRERERLMISTERLNKSSDRINDSRGTMLETEDLGISILQDLHSQRQSLLHTHDTLHGVDDNTDKSKKILSNMSRRMDKSKWILSTIAVLLIFVIILIVYFKLS*

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