SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31480 | AT | Annotation by Michelle Graham. TAIR10: shoot gravitropism 2 (SGR2) | chr1:11266225-11271527 FORWARD LENGTH=933 | SoyBase | E_val: 0 | ISS |
| GO:0009590 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of gravity | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amyloplast organization | SoyBase | N/A | ISS |
| GO:0009959 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative gravitropism | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0008970 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine 1-acylhydrolase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PTHR15457 | Panther | SEC-23 INTERACTING PROTEIN P125 | JGI | ISS | |
| PTHR15457:SF5 | Panther | SEC23 INTERACTING PROTEIN P125-RELATED | JGI | ISS | |
| PF02862 | PFAM | DDHD domain | JGI | ISS | |
| UniRef100_Q8W5R2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein shoot gravitropism 2 (SGR2) n=1 Tax=Arabidopsis thaliana RepID=Q8W5R2_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338462 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338462 related cluster n=1 Tax=unknown RepID=UPI0002338462 | SoyBase | E_val: 0 | ISS |
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Glyma09g36920 not represented in the dataset |
Glyma09g36920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g234500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36920.2 sequence type=CDS gene model=Glyma09g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGGGGAAGAGCTTCGGCCTGACTTGCTGAAAAACACGCCTTCTAACATTGCGAGATTGGAGGACGTGATCGAACACTCTAAAGCAAGGCAAAAGTATCTCGCCCATACTTCTAGCTCCTCTGATGGCGGTGATGTTCGCTGGTACTTTTGTAAGATCTCTTTGGCTCCCAACGAGTTGGCAGCCTCTGTCCCGCCAACAGAGATTGTAGGCAAGAGTGACTATTTTCGTTTTGGCATGAGAGATTCTCTCGCTATTGAAGCATCTTTCTTGCAGAGAGAGGAAGAATTGCTTTCTAGTTGGTGGAGGGAGTATGCCGAATGTAGTGAAGGCCCCAGAGAACGACAAAGTTCTAGTTCCAAGGCAGATACTGAATCTTTTATGGGACATACTCAATCATCTCAACTATATGAAATAGAGGAAGAGAGGGTTGGTGTCCCTGTAAAGGGAGGACTGTACGAGGTAGATTTGGTCAAGAGACATTGTTTCCCTGTTTATTGGAATGGAGAAAACCGACGTGTCCTCAGAGGCCACTGGTTTGCTCGTAAAGGGGGCCTCGATTGGCTACCACTTCGTGAAGATGTTGCTGAACAACTAGAGATTGCTTATCGTAGTCAGGTTTGGCACCGGAGAACATTTCAACCATCAGGACTTTTTGCTGCTCGAGTTGATTTGCAAGGCTCTACCCAAGGCCTGCATGCCCTTTTCATGGGAGAAGATGATACCTGGGAAGCCTGGCTAAATTTTGATGCTTCTGGCTTTTCTAGCTTTGTTAGTTTTGCTGGAAATGGAATTAAACTTAGGCGTGGTTACTCTCCATCAAATTCACCAAAACCAACCCAGGATGAACTAAGGCAGCAGAAGGAGGAGGATATGGATGATTACTGTTCGCAGGTCCCTGTTCGACACTTGGTATTTATGGTTCATGGGATTGGTCAAAGATTGGAAAAGTCCAATTTGGTTGATGATGTGGGCAATTTCCGGCATATTACAGCAAGTCTTGCAGAGCAGCACCTTACTCCACATCAACGTGGCACTCAAAGGGTCCTCTTTATCCCATGCCAGTGGAGAAGAGGTTTGAAGCTGAGTGGTGAAACTGCTGTTGAAAAGATAACTTTGGATGGAGTGCGAGGATTACGTGTCACGCTGAGCGCAACTGTTCATGATGTGTTATACTACATGAGCCCAATTTACTGTCAAGACATAATTAACTCGGTATCCAACCAACTGAATCGATTATATTTGAAGTTTCTCAAAAGAAATCCTGGATATGATGGAAAGGTTTCATTATATGGTCATTCTCTGGGAAGTGTCCTCTCATATGATATCCTTTGCCATCAAGATAATCTATCATCCCCATTTCCAATGGATTGGGTGTATAAGGAACATGGTGAAAATGAGGAATCACTCTCTGATAAGAAAGATCATTATGTGCAGAACTCACCAATCAATCAGGATGACACATTCAGTATGGTGAGCCCCTCTGAAGAAAAAAAGAGTACACAAGAGACTTGTTCAGAAATGGAGGCAGAATATTCTGAGGAGTCCTCAGTTTTAGGCCATGCATTATCAAGTGTAAATGAATTTACTGCAGAACCTATCTCTCTGGAACCAAGTAATAAGGGTGATGTTTCCGAGTTCCTTGCCGATTCTGGTGACACATTTTTTGAGAAAATGGGTGGTGCATTGGATATGCCTCAGAGCATGAATGTTGAGCTGCCAATGGATAAGGAAGAATGTAAAGTTACAAGCAACGAAGATGAAGTAATCAAGAAGCTCAGAGAAGAGATTGATTCATTGAAAGCCAATCTAACTGAACTGGAATCACGTCATAGCAATAATTATACTGAGGAAGAGTTACATTCTGTAAAAAAGTTATCTAAAAAGTTACCTCCCATACAAGAAGCACCAAAGAGTTATACTCCATATATCAAGTACACCAAGCTTCAATTTAAGGTTGATACATTCTTTGCCGTTGGATCCCCTCTTGGTGTATTTCTTGCACTTCGTAATATCCGAATTGGCATTGGTAGAGGCCAAGAATATTGGGAGCAGGAAAATATAAGAGAGGAGATGCCGGCTTGTCGGCAGATGTTCAACATTTTTCACCCCTATGATCCCGTAGCATACAGGATAGAGCCACTTGTGTGCAAAGAATACATCAGCCAACGGCCTGTTTTGATTCCATATCACAGAGGAGGAAAAAGGTTGCATATTGGATTTCAGGAATTTACTGAAGACCTAGCAGTTCGAACTCATGCAATAAAGAATTATATGAAATCTGCAAGGGATAAGGTAATCACAGTGTGTCAGTCGAGGAAAATGGAGAACATAGAAGGGGAGAGTTCTGAAGAGGAAGAACAGCCATCATATGGATCTTTTATGATGGAGAGGTTGACAGGAAGCATGAGTGGACGAATTGATCACATGCTTCAGGACAAGACCTTTGAGCATCCATATCTGCAAGCCATTGGAGCTCATACAAACTATTGGCGGGATTATGATACTGCTCTTTTCATATTGAAACACTTGTATGGAGAAATACCAGAAGATTCTGATTTGTTGGTTGGATTTACTGGGGACAACTCAAAATCTGAGAGTACCTCTGTTAGTTGGTATGAACCGAGAGACACGGTTGAGGAAGATCTTCCGTTGACTTTCTCAGACAAGGTTATGGCCAGAAGCTTCTCGAGCAAAGCTAAGAAGGTTCTGCAGAAGCACACTGCGTTTAATTTCTAA
>Glyma09g36920.2 sequence type=predicted peptide gene model=Glyma09g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEGEELRPDLLKNTPSNIARLEDVIEHSKARQKYLAHTSSSSDGGDVRWYFCKISLAPNELAASVPPTEIVGKSDYFRFGMRDSLAIEASFLQREEELLSSWWREYAECSEGPRERQSSSSKADTESFMGHTQSSQLYEIEEERVGVPVKGGLYEVDLVKRHCFPVYWNGENRRVLRGHWFARKGGLDWLPLREDVAEQLEIAYRSQVWHRRTFQPSGLFAARVDLQGSTQGLHALFMGEDDTWEAWLNFDASGFSSFVSFAGNGIKLRRGYSPSNSPKPTQDELRQQKEEDMDDYCSQVPVRHLVFMVHGIGQRLEKSNLVDDVGNFRHITASLAEQHLTPHQRGTQRVLFIPCQWRRGLKLSGETAVEKITLDGVRGLRVTLSATVHDVLYYMSPIYCQDIINSVSNQLNRLYLKFLKRNPGYDGKVSLYGHSLGSVLSYDILCHQDNLSSPFPMDWVYKEHGENEESLSDKKDHYVQNSPINQDDTFSMVSPSEEKKSTQETCSEMEAEYSEESSVLGHALSSVNEFTAEPISLEPSNKGDVSEFLADSGDTFFEKMGGALDMPQSMNVELPMDKEECKVTSNEDEVIKKLREEIDSLKANLTELESRHSNNYTEEELHSVKKLSKKLPPIQEAPKSYTPYIKYTKLQFKVDTFFAVGSPLGVFLALRNIRIGIGRGQEYWEQENIREEMPACRQMFNIFHPYDPVAYRIEPLVCKEYISQRPVLIPYHRGGKRLHIGFQEFTEDLAVRTHAIKNYMKSARDKVITVCQSRKMENIEGESSEEEEQPSYGSFMMERLTGSMSGRIDHMLQDKTFEHPYLQAIGAHTNYWRDYDTALFILKHLYGEIPEDSDLLVGFTGDNSKSESTSVSWYEPRDTVEEDLPLTFSDKVMARSFSSKAKKVLQKHTAFNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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