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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33470 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:12144632-12146040 FORWARD LENGTH=244 | SoyBase | E_val: 5.00E-85 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0149 | KOG | Predicted RNA-binding protein SEB4 (RRM superfamily) | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF218 | Panther | JGI | ISS | ||
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_B9R8Y3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding region-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8Y3_RICCO | SoyBase | E_val: 9.00E-136 | ISS |
| UniRef100_I1L5T4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5T4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g36880 not represented in the dataset |
Glyma09g36880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g00500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g234200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36880.2 sequence type=transcript gene model=Glyma09g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTATTATGTGAGGCCCTTTCCTCTTTTTTCCAACTTTTGCTTTCTCTTCCCTCCCAATTTTCTCTTTCTCTCTCTTTTTATTTTTTTGATCTCTGACCTAATTGTCTCTCTTCTCTTCTCTTCTCATATTACCACTCATCTCCAGCCACAACCTAGAGAACACCCCCCAAAATTCAGTGGGTATTTCTCATCTTCTTCTGCCCCCATCACCTAGATCTGTCTGTCTATACACTCATTGTTTGACAAAAAAGAAAATAACACTGGGAAGTTTAGTCATAGCTGAAAGCTGACTCTAGCTAGAGGATAATAATAAGATTAAGATCATCCATCCAACAAGAAAGAGGAAGTGTGTTTTTGATTGGATCCACAAAATTCAAGATGACTCCAGTTAATTTGGCTGGCCAGTTTGGTGACACAACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAACATGGAGGAGGAGGAAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGTCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCGGTTTATGGAAGTGGAGCTGCTGCTGCAGCGTTCTACCCATATCTGCAGTACGGAGAAGGGAGTGGCGGTGGCGGAACTAGCGGCGGCTACAGTTCCGGACAGGGTTATGGTGTGAACTACCCTCCTCAGGCTCACCTCTTTCAGTATTCTCCCATTGCTTCCACTGCAGCCGCCACAGCTGGCTATGCCCAGCACTATGGAACACCAGCTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGACCATGCCTCCTCTTCAAGCTCCAATTCCTCATCGCTAGAGACTCATCTCAAACTAGCTATGTCAAAACTTCCCAGTCTCTCATCACTCATCAACCTTTGCCCTAACCATGGTGCTCTCTCTCACACACACCCACTCTTTCACTAACACCAAAATGAAAGTCCATCAATGGCATTTGGGCTTTTCCAGCATAAGAAGCCTCCCGTAGGGGCTCAAATGTTTCTCCATGTTTGGAGAGTCATGCATTCCTTTTGTCTCAAAAAAATATCTGTTTCATCTTCAATGGAAGAAGAGAACCAAACCAACACAAAAGCTATCGGATATAGCTGACTTGTTGGAAAAAAATTAAGAACAGCAAAGCTTGGCCCTGGAAAGGCCAAGCTCAAAAGAACCATCTTCTTAACTTGGGCCCAAGACGGGCTAGGTAAAAGTACAGAATGGTTTCAAAATTTGTAAATGGCAGATCACAGATCGATAACTAGCTCATCAACTAGAAATTTTAAGTTGCTTCTACAAAAATAGGTATTCCCTCCAAGCTATGCTAATCACCTCTGGATGAAGAGGAACTTTTAGCAATCATGGACATTGGATGTCCCAGCTTTTTTGTATGGTAACATCTAGCTAGTCTTAGGCTTTAGTGTTAGGATCAGTCATGTCTTCATAAATATGTTTTTATTTTTATTTTTTATTTTATCAATTTTCACAAAAAGGGGTTTAACCAGCCAACCAATTAACAATCTTCCCTTTGGGTAAGGGGAGGCAATATCTAACTACTGTTTTTTTATCCTGTAAATTCAAAGAGGCTAAACTATGGGAGTTTAAGCCCAATCCACTAATCTTTAGGAGGGATAGTGTTTTAATTTCCCGCTTAGCATAAGTAGTACATTTCATCATCATCTTGAGGACTACGTCAATGGATGTGGAACTCAAAACACTTGCATGGAACCCTGGGAGATATTTTGGTTCCCTTGGGTACTTCACTTACTCACCAACCATGGTTAGGACATAGGTGAATCTCATCACTCTCTATCTCTCTTCTCCCTGCTTTCTGTCTGCCAACTTTTACATCGAGATGGACCTTGATACTCTATTAATTATATGTTTAATTAAGCCTATATGGTTTGGATTGTAATTAGGAATACTAAAGTAGGAGGATTTCATTCTCTGTCCATGCTGGATGAGAATGGATTTGCTACTCATTCTACTATGCCTTTAATTTGATATTATGCTTGCTTCTATTCAACCTATGTCAAGATAAGCAAATCAAGTTAATGCTTCGAGTAATGTTCAACTTCTTTGTTATATTTCAATCAAGGATATTTTATTTATGGCAAGGTCTGGTTTGTGCTAAATGTGAAATTTACACTGGCAAAATCTTGTTGATGTAATCAACTTCAAACATTAAAATTTCTTCTTTTTCATTCCCAACCCAC
>Glyma09g36880.1 sequence type=CDS gene model=Glyma09g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCCAGTTAATTTGGCTGGCCAGTTTGGTGACACAACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAACATGGAGGAGGAGGAAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGTCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCGGTTTATGGAAGTGGAGCTGCTGCTGCAGCGTTCTACCCATATCTGCAGTACGGAGAAGGGAGTGGCGGTGGCGGAACTAGCGGCGGCTACAGTTCCGGACAGGGTTATGGTGTGAACTACCCTCCTCAGGCTCACCTCTTTCAGTATTCTCCCATTGCTTCCACTGCAGCCGCCACAGCTGGCTATGCCCAGCACTATGGAACACCAGCTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGCCTCCTCTTCAAGCTCCAATTCCTCATCGCTAG >Glyma09g36880.2 sequence type=CDS gene model=Glyma09g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCCAGTTAATTTGGCTGGCCAGTTTGGTGACACAACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAACATGGAGGAGGAGGAAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGTCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCGGTTTATGGAAGTGGAGCTGCTGCTGCAGCGTTCTACCCATATCTGCAGTACGGAGAAGGGAGTGGCGGTGGCGGAACTAGCGGCGGCTACAGTTCCGGACAGGGTTATGGTGTGAACTACCCTCCTCAGGCTCACCTCTTTCAGTATTCTCCCATTGCTTCCACTGCAGCCGCCACAGCTGGCTATGCCCAGCACTATGGAACACCAGCTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGA
>Glyma09g36880.1 sequence type=predicted peptide gene model=Glyma09g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDPAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSSFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGAAAAAFYPYLQYGEGSGGGGTSGGYSSGQGYGVNYPPQAHLFQYSPIASTAAATAGYAQHYGTPAMSLAPSPALQSGVTMPPLQAPIPHR* >Glyma09g36880.2 sequence type=predicted peptide gene model=Glyma09g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDPAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSSFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGAAAAAFYPYLQYGEGSGGGGTSGGYSSGQGYGVNYPPQAHLFQYSPIASTAAATAGYAQHYGTPAMSLAPSPALQSVCFAVPQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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