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Report for Sequence Feature Glyma09g36860

Feature Type:gene_model
Chromosome:Gm09
Start:42450920
stop:42452482
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g36860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71310AT Annotation by Michelle Graham. TAIR10: cobalt ion binding | chr1:26878717-26879844 REVERSE LENGTH=176 SoyBaseE_val: 1.00E-76ISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003690GO-mf Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding SoyBaseN/AISS
GO:0003697GO-mf Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0050897GO-mf Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding SoyBaseN/AISS
UniRef100_G7JRC9UniRef Annotation by Michelle Graham. Most informative UniRef hit: SnRK1-interacting protein n=1 Tax=Medicago truncatula RepID=G7JRC9_MEDTR SoyBaseE_val: 4.00E-83ISS
UniRef100_I1L5T0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5T0_SOYBN SoyBaseE_val: 3.00E-125ISS

Expression Patterns of Glyma09g36860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g36860 not represented in the dataset
Glyma09g36860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g36860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g234000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g36860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g36860
>Glyma09g36860.1   sequence type=CDS   gene model=Glyma09g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAGCGTGTCTGAAATTGAGAAATTTGAGCAGAGGAGGAGGAGCATTTAGGTGTGGGCGTTATTCGAAGTTGATACATGCAGAGAGAGAGAGAGAAGAAGAAGAAGAGGAGGTGCCGAGTTCTAGAATCTCTAGGCCGCTCTCTGAAATACTGAAAGAGCTGAACAAGAAAGTACCGGACTCCCTCGTCAAAACCCGCCTCCAGAAAGATCAAGATGCCTCCCCCATCAGATTCATTCCCTGGCATGTTGTCAATCGCATTTTGAACTTACACGCTCCTGAGTGGTCTGGTGAGGTTCGGAATATCACCTATTCCGCCGATGCCAAGTCTGTCTCCGTTGTCTACCGAGTTACCCTTTATGGGACTGATGCTGAGATATTTAGGGAATCAACTGGTACTGCTTCAGTAGACGACACAAGTTATGGAGATCCTGTACAGAAGGCAGAAGCAATGGCTTTTCGTAGAGCTTGTGCACGCTTTGGACTGGGGCTCCACCTTTATCATGAAGATGCATCATAA
Predicted protein sequences of Glyma09g36860
>Glyma09g36860.1   sequence type=predicted peptide   gene model=Glyma09g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASACLKLRNLSRGGGAFRCGRYSKLIHAEREREEEEEEVPSSRISRPLSEILKELNKKVPDSLVKTRLQKDQDASPIRFIPWHVVNRILNLHAPEWSGEVRNITYSADAKSVSVVYRVTLYGTDAEIFRESTGTASVDDTSYGDPVQKAEAMAFRRACARFGLGLHLYHEDAS*






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