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Report for Sequence Feature Glyma09g36750

Feature Type:gene_model
Chromosome:Gm09
Start:42400536
stop:42401932
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g36750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17200AT Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr5:5653524-5655336 REVERSE LENGTH=421 SoyBaseE_val: 7.00E-38ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004650GO-mf Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity SoyBaseN/AISS
PF00295PFAM Glycosyl hydrolases family 28 JGI ISS
UniRef100_B9RP58UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RP58_RICCO SoyBaseE_val: 3.00E-41ISS
UniRef100_I1L5R9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L5R9_SOYBN SoyBaseE_val: 2.00E-118ISS

Expression Patterns of Glyma09g36750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g36750 not represented in the dataset
Glyma09g36750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g36750
ParalogEvidenceComments
Glyma12g00630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g36750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g233100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g36750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g36750
>Glyma09g36750.2   sequence type=CDS   gene model=Glyma09g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGCCTTATAATCGATGGAGGTGGACGAATCGACGGCGGAGGTTCTGATTGGTGGAATTCTTGTAAACTAACTGGGACTTGTCATCTCAATAGTGCAAGAAACCATATATCTATAAATAATTCTAATCTCACAGAAATATTCAATATTACTGCACCTAAAGATAGCCCAAACATTGATGGAATTGACATTTCTGAATCATGCTACATTCTAATTCAGCACTCGACCATTGCAACGGGAGATGACTGCATCGCCATAAACAGTGGCGCATCATGTATTAACATTATTGGTGGTGGATGCGGGTATGCAGGAAATATCTCGTTCGAGCATATCGTGCTTATAAATACCAAAAATCGCATAATTATTGACCAGGATTATGAAAGTGAACAGAAGGAAGACCGAAAGCAGACATCTGAAGTTCAAATAAGTGGAGTGACATATCGTTATGTCAATGGAACTTCTGATGGTGAGACAGCCATTAATTTGAATTGTGGAGGTGGAGCGGGTGCAGGGTGCACTGATATCTTCATGGATGTAGTCAACATAACCTCAGCTTCATCAGGATCAAACGTTCTTGCATCCTGCAACAATGCTCATGGAGTTGCTGCTTCTACTTCACCTCCTGTGTCTTGCTTGTCATAG
Predicted protein sequences of Glyma09g36750
>Glyma09g36750.2   sequence type=predicted peptide   gene model=Glyma09g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGLIIDGGGRIDGGGSDWWNSCKLTGTCHLNSARNHISINNSNLTEIFNITAPKDSPNIDGIDISESCYILIQHSTIATGDDCIAINSGASCINIIGGGCGYAGNISFEHIVLINTKNRIIIDQDYESEQKEDRKQTSEVQISGVTYRYVNGTSDGETAINLNCGGGAGAGCTDIFMDVVNITSASSGSNVLASCNNAHGVAASTSPPVSCLS*






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